Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq26 605 3e-168 >seq26 Length=15232 Score = 605 bits (670), Expect = 3e-168 Identities = 729/988 (74%), Gaps = 4/988 (0%) Strand=Plus/Minus Query 7888 GATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAG 7947 || |||||||| | |||||||||||| || || | ||| ||||| || |||||||||| | Sbjct 2222 GAAGCTAAGTCAAGTGGGAAGTTGTGAGCGTTACGTTCGTGCATTACCTCCATACCTAGG 2163 Query 7948 TTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACT 8007 || || | ||| | | |||| ||||||| ||| | ||| | | || |||||| Sbjct 2162 TTAGCACGGTTGATAATGTCAGCCCATGTGTTAATTACACGACCTTGAGAGTCTACAACT 2103 Query 8008 GATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTT 8067 |||||||||||||| || ||||| |||||||||||||| || | ||||| | || ||| Sbjct 2102 GATTGGTTAAAGTTGAAACCGTTTAGGTTAAATGCCATAGTTGATATACCTAAAGCAGTA 2043 Query 8068 AACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTA 8127 ||||| | | ||| ||||| ||| ||| | ||||||||| | | | |||||| Sbjct 2042 AACCAGATCCCTACTACTGGCCATGCAGCTAAGAAGAAGTGTAAAGAACGTGAGTTGTTG 1983 Query 8128 AACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAG 8187 || || || || ||||| || || | |||||||| || || ||||||||||| || || Sbjct 1982 AAAGAAGCGTATTGGAAAATCAAACGCCCAAAGTAACCGTGCGCAGCAACAATGTTGTAA 1923 Query 8188 GTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCT 8247 || |||||||||||||| || || ||||| | ||| ||| | | |||||||| || Sbjct 1922 GTTTCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCAGATTGGTTCTCAGTTGTTTCA 1863 Query 8248 CTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAAC 8307 | ||||| || || || ||||| ||||| ||||||||| ||| || || ||||| || Sbjct 1862 CGGATTAATGATGAAGTTACTAATGAACCATGCATAGCAGAGAAAAGAGAACCACCAAAT 1803 Query 8308 ATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAAT 8367 | |||||| || ||| ||| |||||||| ||||| | ||||| ||||| ||||||||| Sbjct 1802 ACACCTGCAACACCTAACATGTGGAAAGGGTGCATTAAGATGTTGTGCTCAGCTTGGAAT 1743 Query 8368 ACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCC 8427 || | ||| |||||||| ||||| || ||||||| ||||| || ||| || || || Sbjct 1742 ACAATCATAAAGTTAAAAGTACCTGAGATACCTAAGGGCATACCGTCACTAAAAGACCCT 1683 Query 8428 TGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCT 8487 ||||| | || || | | |||||| || |||||| | ||||| ||| || ||| Sbjct 1682 TGACCGATAGGGTAGATAATGAACACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCT 1623 Query 8488 ACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAA 8547 ||| ||||| || | ||||||||| ||| | || | |||||| | | |||||||| Sbjct 1622 ACAGCAATCCAAGGGCGCATACCTAAACGGAAAGAAAGCTCCCATTCACGCCCCATGTA- 1564 Query 8548 GCAGAAATTCCAATAAGGAA--GTGGAAGATAACCAACTGATATGGACCTCCGTTATACA 8605 ||| | || | |||| || |||| | | ||| || || || ||||| ||||| || | Sbjct 1563 GCA-ACATACACCTAAGAAAAAGTGGCATACAACTAATTGGTAAGGACCACCGTTGTATA 1505 Query 8606 ACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGG 8665 ||||||||||||| | || |||||||| || || ||||||||||| ||||| || || | Sbjct 1504 ACCACTCATCTAAAGAAGCTGCTTCCCAGATTGGGTAGAAGTGTAAACCAATTGCATTTG 1445 Query 8666 AAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAG 8725 ||| ||||| |||||||||||||| ||||||||||| |||| | ||||| | || | Sbjct 1444 AAGTAGGAACAACAGCACCAGAGATAATGTTGTTTCCGTACAACAGGGAACCAGACACTG 1385 Query 8726 GTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAG 8785 | ||||||||||||||||| || ||||| ||||| || | |||||| | ||||| || Sbjct 1384 GCTCACGAATACCGTCGATGTCCACAGGAGGAGCTGCTACAAATGCAATAATAAACACAG 1325 Query 8786 TAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGT 8845 | | |||| ||| | ||| ||||||| ||| ||||||||||| | || | | || Sbjct 1324 TTGTTGCAGTTAAAAGAGTAGGGATCATTAAAACACCAAACCAACCAATGTAGATACGGT 1265 Query 8846 TGTTTGTACTTGTAACCCACTCGCAAAA 8873 | | || || |||||||| ||||| Sbjct 1264 TTTCAGTTGAAGTTACCCACTCACAAAA 1237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615857188264440