Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq26 663 0.0 seq7 527 7e-145 seq17 86.0 7e-12 >seq26 Length=15232 Score = 663 bits (734), Expect = 0.0 Identities = 745/994 (75%), Gaps = 2/994 (0%) Strand=Plus/Plus Query 165760 TGGGAATCCTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTT 165819 |||| | ||| || || ||||| || || | |||||| | || | ||||||||| Sbjct 1228 TGGGCACGCTTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTT 1287 Query 165820 GGTACGCTGATGATTCCAACTCTGTTGGCAGCAACTATCTG-CTTCATCGTCGCCTTCAT 165878 ||| | ||||| || ||||| || | ||||| | ||| || || | || || | Sbjct 1288 GGTGTTTTAATGATCCCTACTCTTTTAACTGCAAC-AACTGTGTTTATTATTGCATTTGT 1346 Query 165879 CGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTA 165938 || ||||| ||||||||||||||||| || ||||| || || ||||||| ||| |||| Sbjct 1347 AGCAGCTCCTCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTA 1406 Query 165939 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTT 165998 || |||||||| ||||||||||| |||||||| |||| || ||||||||| ||||||| Sbjct 1407 CGGAAACAACATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTT 1466 Query 165999 CTATCCCATCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCA 166058 ||| || ||||||||||| || || | || || ||| | || ||||||||||||| ||| Sbjct 1467 CTACCCAATCTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCA 1526 Query 166059 ACTGGTTGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACT 166118 | | ||||| | |||||| | | || | | | ||||||||| ||||| ||||| || Sbjct 1527 ATTAGTTGTATGCCACTTTTTCTTAGGTGTATGTTGCTACATGGGGCGTGAATGGGAGCT 1586 Query 166119 GTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGC 166178 |||| |||| |||||||||| || ||||| ||| |||||||| |||||||| || || Sbjct 1587 TTCTTTCCGTTTAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGC 1646 Query 166179 TGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCC 166238 ||| | ||| || ||| | | || ||| |||||||||| ||| ||| | ||||| Sbjct 1647 TGCTACTGCTGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCC 1706 Query 166239 ACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCT 166298 | || |||||||| || || |||| ||| | || ||||||||||||||||| || | Sbjct 1707 CTTAGGTATCTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTT 1766 Query 166299 CATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGC 166358 ||||| || ||||| ||| | || ||||| || ||||||||||| | | || ||| Sbjct 1767 AATGCACCCTTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGC 1826 Query 166359 TATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCA 166418 |||||| || || || ||||| || | | | || || ||||| | | |||| Sbjct 1827 TATGCATGGTTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGC 1886 Query 166419 AAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGG 166478 ||| | |||||||| ||||| |||||||||||||| |||||||| || || || || || Sbjct 1887 TAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGG 1946 Query 166479 TTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTT 166538 |||||| || |||||||| |||||||||||||| ||||||||||| || || || ||||| Sbjct 1947 TTACTTTGGGCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTT 2006 Query 166539 CTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGAT 166598 |||| | ||||||||||| || || || |||||||| || || | || | || || || Sbjct 2007 CTTCTTAGCTGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTAT 2066 Query 166599 GGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGT 166658 |||||| ||||| |||||||||||||| ||||| || | | || ||| |||||||| Sbjct 2067 GGCATTTAACCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGT 2126 Query 166659 GTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGA 166718 | ||||| ||||| || || | ||||| ||| || |||||||| || ||||| || Sbjct 2127 AATTAACACATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGA 2186 Query 166719 GCGTAACGCACACAACTTCCCCCTCGACCTCGCT 166752 |||||||| ||||||||||| || ||| | ||| Sbjct 2187 ACGTAACGCTCACAACTTCCCACTTGACTTAGCT 2220 >seq7 Length=22195 Score = 527 bits (584), Expect = 7e-145 Identities = 733/1024 (72%), Gaps = 2/1024 (0%) Strand=Plus/Plus Query 167008 GGGTGGTTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGG 167067 || ||||||||| | ||||| ||| | | || |||||||||||||| || ||| Sbjct 4105 GGTTGGTTTGATACAGTAGATGATTGGGTACGCCGCGACCGTTTTGTTTTTGTAGGTTGG 4164 Query 167068 TCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACT 167127 || || | | || ||||| || || ||||||||| | || || ||| | ||||||| | Sbjct 4165 TCAGGTTTATTACTCTTTCCTACAGCATATCTTGCTTTAGGTGGATGGTTAACTGGGATT 4224 Query 167128 ACTTTCGTCACGAGTTGGTATACTCATGGACTCGCGTCCAGTTATCTTGAGGGTGCGAAC 167187 ||||| || || |||||||||||| || | || | |||| || || ||| || Sbjct 4225 ACTTTTGTAACTTCTTGGTATACTCACGGTTTAGCAACTAGTTTCCTAGAAGGTTGTAA- 4283 Query 167188 TTTCTTA-CTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCT 167246 ||||||| |||| |||||| ||||||||| | |||||||||||||||| | |||| Sbjct 4284 TTTCTTAACTGCTGCAGTTTCAACTCCAGCAAACAGTATGGGTCATTCTTTATTGTTTCT 4343 Query 167247 ATGGGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGC 167306 ||||| || ||| ||||| ||||| | ||| | ||| | || || || ||||| Sbjct 4344 TTGGGGACCAGAAGCTCAATCTGATTTTACTCGTTGGTTTCAATTAGGCGGGCTTTGGGC 4403 Query 167307 TTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACT 167366 ||||| || || || ||||| |||||| | |||||||| ||| | || || |||||| | Sbjct 4404 ATTTGTAGCTCTTCATGGAGCTTTTGCTTTAATTGGTTTTATGTTACGCCAATTTGAAAT 4463 Query 167367 TGCTCGCCTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGT 167426 |||||| | | | ||||| |||||||||||||| || || | ||||||||||| Sbjct 4464 TGCTCGTTCAGTAAGACTTCGTCCTTACAATGCTATTGCGTTTTCAGCACCTATTGCTGT 4523 Query 167427 CTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTC 167486 || ||| ||||| | | || || | ||||| | ||||| ||||| || Sbjct 4524 TTTTGTTTCTGTTTTTTTAATTTACCCGTTAGGTCAGTCTGGTTGGTTTTTTGCTCCTAG 4583 Query 167487 CTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGAC 167546 || || | || | ||||| |||||| | || || |||||||||||||||||||||| Sbjct 4584 TTTTGGTATTGCTTCAATCTTTCGATTCATTCTTTTTTTCCAAGGATTCCACAACTGGAC 4643 Query 167547 ACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGC 167606 | || || || || |||||||| ||||| ||| | | |||| ||| ||||||| ||| Sbjct 4644 TTTAAACCCTTTCCACATGATGGGAGTAGCTGGTGTATTAGGTGCTGCTTTGCTTTGTGC 4703 Query 167607 AATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTT 167666 || || |||| || || || || ||| | | |||||||||||| ||||||||||| Sbjct 4704 GATTCACGGTGCAACTGTTGAAAACACTCTTTTTGAAGATGGTGATGGTGCAAACACTTT 4763 Query 167667 TAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATT 167726 ||||| | | ||||| | |||||| || || || | || ||||| || || || Sbjct 4764 CCGTGCATTTAACCCAACTCAAGCAGAAGAAACGTACTCTTTCGTGACAGCTAATCGTTT 4823 Query 167727 CTGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTT 167786 ||||||||| ||||| || | ||||| |||||||| |||||||| || |||||||| Sbjct 4824 CTGGTCTCAAATCTTTGGTGTAGCTTTTTCAAACAAACGATGGCTTCACTTTTTTATGTT 4883 Query 167787 ATTCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAA 167846 ||| || || || | || | |||| | |||| | | ||| | || | || Sbjct 4884 ATTTGTGCCAGTAACTGGTTTATGGATGAGTGCACTTGGTGTTGTAGGTTTAGCATTAAA 4943 Query 167847 TCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGA 167906 ||| || |||||||||||||| |||||||| || | || || || ||||| || ||||| Sbjct 4944 TCTACGAGCTTACGATTTCGTATCTCAAGAAATTCGTGCAGCAGAAGATCCTGAATTTGA 5003 Query 167907 AACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTAT 167966 ||||| || || |||||||| ||| | || |||||| |||| |||||| | || || Sbjct 5004 GACTTTTTACACAAAAAACATTCTTTTAAACGAAGGTATTCGTGCATGGATGGCTGCTCA 5063 Query 167967 CGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACT 168026 ||||| || ||||| || |||| ||||| ||||| || | ||||| || ||||| || Sbjct 5064 AGATCAGCCACATGAAAAAATTGTATTCCCTGAGGAGGTATTACCACGTGGAAACGCTCT 5123 Query 168027 ATAA 168030 ||| Sbjct 5124 TTAA 5127 Score = 102 bits (112), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 18127 ATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAA 18186 ||||| |||||||||| || ||||| ||||||||||||||||||||||||||||||| Sbjct 19690 ATTCCCTAGTAGCTCAGTGGTAGAGCGCTCGACTGTTAATCGATTGGTCGTAGGTTCAAG 19749 Query 18187 TCCTACCTGGGGAG 18200 |||||||||||||| Sbjct 19750 TCCTACCTGGGGAG 19763 >seq17 Length=65237 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 166095 CTACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGT 166154 |||||||| |||||| |||||||| |||| |||| ||||||||||| | ||||| ||| Sbjct 34150 CTACATGGTTCGTGAATGGGAACTCTCTTCCCGTTTAGGTATGCGTACTTGGATTGCTGT 34091 Query 166155 TGCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTA 166191 | |||| |||||||| || ||||| | ||| ||| Sbjct 34090 CCCCTACTATGCACCAGTTGCAGCTGCTACTGCTGTA 34054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561243250438800