Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq26 506 6e-139 >seq26 Length=15232 Score = 506 bits (560), Expect = 6e-139 Identities = 712/991 (72%), Gaps = 8/991 (1%) Strand=Plus/Minus Query 25873 TGATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAG 25932 ||| |||||||||||||| ||||| ||||| ||||| |||||||| || || | || || Sbjct 2223 TGAAGCTAAGTCAAGTGGGAAGTTGTGAGCGTTACGTTCGTGCATTACCTCCATACCTAG 2164 Query 25933 GTTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTAC 25992 |||||| ||||| | | ||||||||||| |||| || | | ||||| || Sbjct 2163 GTTAGCACGGTTGATAATGTCAGCCCATGTGTTAATTACACGACCTTGAGAGTCTACAAC 2104 Query 25993 TGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGT 26052 ||| ||||||||||| ||||| ||||||||||||||||| || | ||||| | || || Sbjct 2103 TGATTGGTTAAAGTTGAAACCGTTTAGGTTAAATGCCATAGTTGATATACCTAAAGCAGT 2044 Query 26053 CAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATT 26112 | ||| || || || || ||||| | ||| | ||||| || | |||||| ||| || Sbjct 2043 AAACCAGATCCCTACTACTGGCCATGCAGCTAAGAAGAAGTGTAAAGAACGTGAGTTGTT 1984 Query 26113 AAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATA 26172 ||| || || || ||||| || | ||||||||| ||||| ||||| ||||| || || Sbjct 1983 GAAAGAAGCGTATTGGAAAATCAAACGCCCAAAGTAACCGTGCGCAGCAACAATGTTGTA 1924 Query 26173 TGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTC 26232 || ||||| ||||| || || || || || | || || | ||| || ||||| Sbjct 1923 AGTTTCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCAGATTGGTTCTCAGTTGTTTC 1864 Query 26233 TGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAA 26292 || | ||| ||||| || || || |||||||||| |||||||| ||||| || Sbjct 1863 ACGGATTAATGATGAAGTTACTAATGAACCATGCATAGCAGAGAAAAGAGAACCACCAAA 1804 Query 26293 AACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAA 26352 || || |||||||| ||| ||||| |||||||| | || || || || |||||||| Sbjct 1803 TACACCTGCAACACCTAACATGTGGAAAGGGTGCATTAAGATGTTGTGCTCAGCTTGGAA 1744 Query 26353 TACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCC 26412 ||| | |||||||||||||||||| |||||||| | ||||| || ||||||||| ||| Sbjct 1743 TACAATCATAAAGTTAAAAGTACCTGAGATACCTAAGGGCATACCGTCACTAAAAGACCC 1684 Query 26413 TTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGC 26472 ||| |||| ||| || | | |||||| || ||| || | | |||||| | || || Sbjct 1683 TTGACCGATAGGGTAGATAATGAACACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGC 1624 Query 26473 AACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATA 26532 ||| ||||| || | ||| |||| | | |||| || ||||| | | ||| ||| Sbjct 1623 TACAGCAATCCAAGGGCGCATACCTAAACGGAAAGAAAGCTCCCATTCACGCCC--CATG 1566 Query 26533 T-GCTGC-TACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTAT 26590 | || | ||| |||| || |||||| | | || | ||| || || || || |||||| Sbjct 1565 TAGCAACATACACCTAAGAAAAAGTGGCATACAACTAATTGGTAAGGACCACCGTTGTAT 1506 Query 26591 AGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTA 26650 | |||||| || | | | ||||||||||| ||||| || |||| || ||||| || Sbjct 1505 AACCACTCATCTAAAGAAGCTGCTTCCCAGATTGGGTAGAAGTGTAAACCAATTGCATTT 1446 Query 26651 GAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACT 26710 || | || || || || || || || || ||||||||||||| | || || || ||| Sbjct 1445 GAAGTAGGAACAACAGCACCAGAGATAATGTTGTTTCCGTACAACAGGGAACCAGACACT 1386 Query 26711 GGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACA 26769 |||||||| || || || || || ||||| || ||||| | || |||| ||||| ||| Sbjct 1385 GGCTCACGAATACCGTCGATGTCCACAGGAGGAGCTGCTACAAATGCAATAATAAACACA 1326 Query 26770 TGTAGTGGCTGCGAGTA-AGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGAC 26828 || || || | | | || |||| ||||| | || || ||||| || | |||| || Sbjct 1325 -GTTGTTGCAGTTAAAAGAGTAGGG-ATCATTAAAACACCAAACCAACCAATGTAGATAC 1268 Query 26829 GGTTCTCAGTACTTGTAACCCACTCACAAAA 26859 |||| ||||| || |||||||||||||| Sbjct 1267 GGTTTTCAGTTGAAGTTACCCACTCACAAAA 1237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147710812487840