Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq26 764 0.0 >seq26 Length=15232 Score = 764 bits (846), Expect = 0.0 Identities = 759/979 (78%), Gaps = 4/979 (0%) Strand=Plus/Plus Query 154976 AGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCC 155035 ||||||||||||| |||| ||||| ||||| | |||||||| |||||| | ||||||| Sbjct 1244 AGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTTGGTGTTTTAATGATCC 1303 Query 155036 CTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAG 155095 || || | |||| | || || ||| | || || | || || |||||||| | Sbjct 1304 CTACTCTTTTAACTGCAACAACTGTGTTTATTATTGCATTTGTAGCAGCTCCTCCTGTGG 1363 Query 155096 ACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCT 155155 |||| || ||||||||||| || || ||||||| | |||| || |||||||| |||| Sbjct 1364 ACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTACGGAAACAACATTATCT 1423 Query 155156 CTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAG 155215 ||||||||||||| |||| |||||| ||||||||| | |||||||| || || ||||||| Sbjct 1424 CTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTTCTACCCAATCTGGGAAG 1483 Query 155216 CAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACT 155275 |||| || | ||||||||||| ||||| |||||||||| |||| | || || | ||||| Sbjct 1484 CAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGTATGCCACT 1543 Query 155276 TC--CTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGG 155333 | |||| | || || ||| || ||| | ||||| ||||||| |||| | || Sbjct 1544 TTTTCTTAGGTGTATGTT-GC-TACATGGGGCGTGAATGGGAGCTTTCTTTCCGTTTAGG 1601 Query 155334 CATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATT 155393 ||||| |||||||| ||| || |||||||||||||| | ||||| ||||| || Sbjct 1602 TATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTGTT 1661 Query 155394 CCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGG 155453 | || | || ||| |||||||||| ||||| ||| | ||||| | |||||||| || Sbjct 1662 CATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCCCTTAGGTATCTCAGG 1721 Query 155454 TACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCA 155513 ||||||||||| |||| | || |||||||| || ||||| ||| | |||||||| ||||| Sbjct 1722 TACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTTAATGCACCCTTTCCA 1781 Query 155514 CATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATT 155573 |||| | || || |||||||| || ||||| |||||||||||||||||||| |||||||| Sbjct 1782 CATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGCTATGCATGGTTCATT 1841 Query 155574 GGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAA 155633 || || || ||| ||||||||||||| |||||| | | ||| ||| | |||||||| Sbjct 1842 AGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGCTAACGAAGGTTACAA 1901 Query 155634 GTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCT 155693 ||||| ||||||||||||||||| |||||||||||||| || || ||||| || ||| | Sbjct 1902 ATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGGTTACTTTGGGCGTTT 1961 Query 155694 TATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATG 155753 || ||||| || || || |||||||||||| | | | ||||||||| | |||||||| Sbjct 1962 GATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTTCTTCTTAGCTGCATG 2021 Query 155754 GCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAA 155813 ||| || || | |||||| |||||| | ||| | ||||| |||||||| ||||| || Sbjct 2022 GCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTATGGCATTTAACCTAAA 2081 Query 155814 CGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGTGGTAAAGTCATCCCTACATGGGC 155873 |||||||||||| ||||| || || |||||| || ||| || || |||||||| Sbjct 2082 CGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGTAATTAACACATGGGC 2141 Query 155874 AGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAA 155933 |||||| | ||||| ||| || |||||||| ||||||||||| |||||||||||||| Sbjct 2142 TGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGAACGTAACGCTCACAA 2201 Query 155934 CTTCCCTCTTGACCTTGCT 155952 |||||| |||||| | ||| Sbjct 2202 CTTCCCACTTGACTTAGCT 2220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584830250832120