Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq26 554 1e-153 >seq26 Length=15232 Score = 554 bits (614), Expect = 1e-153 Identities = 719/988 (73%), Gaps = 4/988 (0%) Strand=Plus/Minus Query 40530 GAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGA 40589 ||||||||||| || || ||||||||||||||||| ||||||||||| ||||||||||| Sbjct 2222 GAAGCTAAGTCAAGTGGGAAGTTGTGAGCGTTACGTTCGTGCATTACCTCCATACCTAGG 2163 Query 40590 CTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACT 40649 | | ||| | || |||||||| || ||| || ||| | || |||||| ||| Sbjct 2162 TTAGCACGGTTGATAATGTCAGCCCATGTGTTAATTACACGACCTTGAGAGTCTACAACT 2103 Query 40650 GACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTA 40709 || ||||||||||| ||||| || |||||||| |||||||| |||||||| | | ||| Sbjct 2102 GATTGGTTAAAGTTGAAACCGTTTAGGTTAAATGCCATAGTTGATATACCTAAAGCAGTA 2043 Query 40710 AGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTG 40769 | ||| || || | || || | ||| | | |||||||||| | ||| |||||| Sbjct 2042 AACCAGATCCCTACTACTGGCCATGCAGCTAAGAAGAAGTGTAAAGAACGTGAGTTGTTG 1983 Query 40770 AATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAA 40829 || ||||| ||||| || || | | |||||||||||||| ||||| || ||||| ||| Sbjct 1982 AAAGAAGCGTATTGGAAAATCAAACGCCCAAAGTAACCGTGCGCAGCAACAATGTTGTAA 1923 Query 40830 GTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCC 40889 || || |||| ||||| || || || || | ||| |||| | || || || || Sbjct 1922 GTTTCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCAGATTGGTTCTCAGTTGTTTCA 1863 Query 40890 CGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAG 40949 || || | ||| ||||| || | || |||||||||| || | || ||||||||| Sbjct 1862 CGGATTAATGATGAAGTTACTAATGAACCATGCATAGCAGAGAAAAGAGAACCACCAAAT 1803 Query 40950 ACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAG 41009 || |||||||| || | ||| ||||| |||||||| | |||||||| || |||||||| Sbjct 1802 ACACCTGCAACACCTAACATGTGGAAAGGGTGCATTAAGATGTTGTGCTCAGCTTGGAAT 1743 Query 41010 ACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCC 41069 |||| ||| ||||| || || || ||| ||||| |||||||| ||| ||||| || Sbjct 1742 ACAATCATAAAGTTAAAAGTACCTGAGATACCTAAGGGCATACCGTCACTAAAAGACCCT 1683 Query 41070 TGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCC 41129 ||||||| || || | | ||| ||||| ||| |||| | ||| || | ||| || Sbjct 1682 TGACCGATAGGGTAGATAATGAACACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCT 1623 Query 41130 ACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTAT 41189 ||| ||||| || | |||||||| | | | ||||| ||||| | | || ||| Sbjct 1622 ACAGCAATCCAAGGGCGCATACCTAAACGGAAAGAAAGCTCCCATTCACGCCCCATGTA- 1564 Query 41190 GCTGC-TACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAG 41248 || | ||| |||| |||||||| | |||| | ||| || || || |||||||||| Sbjct 1563 GCAACATACACCTAAGAAAAAGTGGCATACAACTAATTGGTAAGGACCACCGTTGTATAA 1504 Query 41249 CCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGA 41308 |||||| || | | | |||||||||||||||||||| |||| || ||||| || || Sbjct 1503 CCACTCATCTAAAGAAGCTGCTTCCCAGATTGGGTAGAAGTGTAAACCAATTGCATTTGA 1444 Query 41309 GCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGG 41368 | ||||| ||||| ||||| ||||| ||||| ||||||| | || || || || || Sbjct 1443 AGTAGGAACAACAGCACCAGAGATAATGTTGTTTCCGTACAACAGGGAACCAGACACTGG 1384 Query 41369 CTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAAACA-TG 41427 |||||| || || || || || ||||| || ||||| | ||| || || || ||||| | Sbjct 1383 CTCACGAATACCGTCGATGTCCACAGGAGGAGCTGCTACAAATGCAATAAT-AAACACAG 1325 Query 41428 TGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGT 41487 | || ||||||| | | || ||||||| |||||||||||||| | ||| | |||| Sbjct 1324 TTGTTGCAGTTAAAAGAGTAGGGATCATTAAAACACCAAACCAACCAATGTAGATACGGT 1265 Query 41488 TGTCGGTGCTAGTGACCCAGTTACAAAA 41515 | || || ||| ||||| | |||||| Sbjct 1264 TTTCAGTTGAAGTTACCCACTCACAAAA 1237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143701244722518