Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq26 697 0.0 >seq26 Length=15232 Score = 697 bits (772), Expect = 0.0 Identities = 749/986 (76%), Gaps = 10/986 (1%) Strand=Plus/Minus Query 67361 AGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCC 67420 ||| | |||||| |||||||||||||||||||| |||||||| || ||||| || || Sbjct 2220 AGCTAAGTCAAGTGGGAAGTTGTGAGCGTTACGTTCGTGCATTACCTCCATACCTAGGTT 2161 Query 67421 TGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT---GCGTCAACGAC 67477 || | ||| | ||||| ||||| || ||| || || |||| | ||| || || Sbjct 2160 AGCACGGTTGATAATGTCAGCCCATGTGTTAATTAC---ACGACCTTGAGAGTCTACAAC 2104 Query 67478 GGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGT 67537 |||||||| |||||||||||||| ||||| |||||||||||||| | ||| | ||||| Sbjct 2103 TGATTGGTTAAAGTTGAAACCGTTTAGGTTAAATGCCATAGTTGATATACCTAAAGCAGT 2044 Query 67538 GAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTT 67597 |||||||| | || || || ||||||| | ||||||||| | | | ||||||||| Sbjct 2043 AAACCAGATCCCTACTACTGGCCATGCAGCTAAGAAGAAGTGTAAAGAACGTGAGTTGTT 1984 Query 67598 GAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTA 67657 |||||| || || ||||| ||||| || || ||||| || || ||||||||||||||||| Sbjct 1983 GAAAGAAGCGTATTGGAAAATCAAACGCCCAAAGTAACCGTGCGCAGCAACAATGTTGTA 1924 Query 67658 AGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTC 67717 ||| ||||||||||| ||||| |||||||| | ||| || | | |||||| ||||| Sbjct 1923 AGTTTCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCAGATTGGTTCTCAGTTGTTTC 1864 Query 67718 TCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAA 67777 | ||| | || ||||| || | ||||| ||||||||| || || |||||||| || Sbjct 1863 ACGGATTAATGATGAAGTTACTAATGAACCATGCATAGCAGAGAAAAGAGAACCACCAAA 1804 Query 67778 TACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAA 67837 ||||||||| || || | ||| ||||| |||||||| | |||||||||||| |||||||| Sbjct 1803 TACACCTGCAACACCTAACATGTGGAAAGGGTGCATTAAGATGTTGTGCTCAGCTTGGAA 1744 Query 67838 CACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACC 67897 || | ||| ||||||||||||| || ||||| | ||||| ||||| ||||| || Sbjct 1743 TACAATCATAAAGTTAAAAGTACCTGAGATACCTAAGGGCATACCGTCACTAAAAGACCC 1684 Query 67898 TTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGC 67957 |||||||| ||| |||| | ||||||||| || || | ||||| |||||||| || Sbjct 1683 TTGACCGATAGGGTAGATAATGAACACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGC 1624 Query 67958 TACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTA 68017 |||| |||||||| |||||||| | |||| ||||||| ||||| | ||| || ||| Sbjct 1623 TACAGCAATCCAAGGGCGCATACCTAAACGGAAAGAAAGCTCCCATTCACGCCCCATGTA 1564 Query 68018 TGCTGTGATTCCGATAAG--GAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATAC 68075 || || | |||| |||||| | || || | |||| |||| ||||| || || Sbjct 1563 -GC-AACATACACCTAAGAAAAAGTGGCATACAACTAATTGGTAAGGACCACCGTTGTAT 1506 Query 68076 AACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTT 68135 ||||||||||||| || |||||||||||||| || |||||||| | ||| ||||| ||| Sbjct 1505 AACCACTCATCTAAAGAAGCTGCTTCCCAGATTGGGTAGAAGTGTAAACCAATTGCATTT 1446 Query 68136 GAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACA 68195 ||| ||||||||||||||||||| || |||||||| ||||||| || ||||| | || Sbjct 1445 GAAGTAGGAACAACAGCACCAGAGATAATGTTGTTTCCGTACAACAGGGAACCAGACACT 1386 Query 68196 GGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAA 68255 || || | ||||| ||||| || || ||||| ||||| | |||||||| || || | Sbjct 1385 GGCTCACGAATACCGTCGATGTCCACAGGAGGAGCTGCTACAAATGCAATAATAAACACA 1326 Query 68256 GTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAGATGCGA 68315 |||| ||| | | | ||| ||||| || ||||| |||||||||| ||||| || Sbjct 1325 GTTGTTGCAGTTAAAAGAGTAGGGATCATTAAAACACCAAACCAACCAATGTAGATACGG 1266 Query 68316 TTGTCAACTGAGGTGACCCAGTTACA 68341 || ||| ||| || ||||| | ||| Sbjct 1265 TTTTCAGTTGAAGTTACCCACTCACA 1240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566942402209320