Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq26 704 0.0 seq7 585 3e-162 >seq26 Length=15232 Score = 704 bits (780), Expect = 0.0 Identities = 751/986 (76%), Gaps = 4/986 (0%) Strand=Plus/Minus Query 67842 AGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAAACC 67901 ||| | ||| || ||||||||||| |||||||| || ||||| || |||||||| | Sbjct 2220 AGCTAAGTCAAGTGGGAAGTTGTGAGCGTTACGTTCGTGCATTACCTCCATACCTAGGTT 2161 Query 67902 AGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGATAGA 67961 ||| ||||||| || ||| ||||| || | || ||| | || | | || Sbjct 2160 AGCACGGTTGATAATGTCAGCCCATGTGTTAATTACACGACCTTGAGAGTCTACAACTGA 2101 Query 67962 CTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAA 68021 ||||| ||||||||||| || ||||| |||||||| || | ||| | ||||| || Sbjct 2100 TTGGTTAAAGTTGAAACCGTTTAGGTTAAATGCCATAGTTGATATACCTAAAGCAGTAAA 2041 Query 68022 CCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAA 68081 |||||| || || || ||||||||||| | ||||||||| | ||||| ||||||||||| Sbjct 2040 CCAGATCCCTACTACTGGCCATGCAGCTAAGAAGAAGTGTAAAGAACGTGAGTTGTTGAA 1981 Query 68082 CGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGT 68141 || || || ||||| |||| ||| || ||||| || || |||||||||||||||||||| Sbjct 1980 AGAAGCGTATTGGAAAATCAAACGCCCAAAGTAACCGTGCGCAGCAACAATGTTGTAAGT 1921 Query 68142 CTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACG 68201 ||||||||||||||||| |||||||| | ||| || | | ||||| |||||||| Sbjct 1920 TTCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCAGATTGGTTCTCAGTTGTTTCACG 1861 Query 68202 AACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATAC 68261 | | ||| ||||| || | ||||||||||| ||| ||| ||||| ||||||||||| Sbjct 1860 GATTAATGATGAAGTTACTAATGAACCATGCATAGCAGAGAAAAGAGAACCACCAAATAC 1801 Query 68262 GCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACAC 68321 || ||||| || | ||| ||||| |||||||| | |||||||||||| |||||||| || Sbjct 1800 ACCTGCAACACCTAACATGTGGAAAGGGTGCATTAAGATGTTGTGCTCAGCTTGGAATAC 1741 Query 68322 CAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTG 68381 | ||| |||| |||||||| || || || | ||||| ||||| || || ||||| Sbjct 1740 AATCATAAAGTTAAAAGTACCTGAGATACCTAAGGGCATACCGTCACTAAAAGACCCTTG 1681 Query 68382 ACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAAC 68441 ||||| ||| |||| | ||| || || | || |||||||| ||||||||||| || || Sbjct 1680 ACCGATAGGGTAGATAATGAACACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTAC 1621 Query 68442 ACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGC 68501 | |||||||| |||||||| | ||| | ||||| ||||||||||| |||||||| || Sbjct 1620 AGCAATCCAAGGGCGCATACCTAAACGGAAAGAAAGCTCCCATTCACGCCCCATGTA-GC 1562 Query 68502 AA-AGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAACC 68560 || | | ||| | | ||||| | | || | |||| |||||||||| ||||| |||| Sbjct 1561 AACATACACCTAAGAAAAAGTGGCATACAACTAATTGGTAAGGACCACCGTTGTATAACC 1502 Query 68561 ACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAAC 68620 ||||||| | | ||||||||||| || || || ||||| | |||||||||||||||| Sbjct 1501 ACTCATCTAAAGAAGCTGCTTCCCAGATTGGGTAGAAGTGTAAACCAATTGCATTTGAAG 1442 Query 68621 TAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTT 68680 ||||||||||||||||||| || |||||||| || |||| || ||||||| || || | Sbjct 1441 TAGGAACAACAGCACCAGAGATAATGTTGTTTCCGTACAACAGGGAACCAGACACTGGCT 1382 Query 68681 CACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGATG 68739 |||||||||| |||||||||||||| ||||| || | || || | || || |||| || Sbjct 1381 CACGAATACCGTCGATGTCCACAGGAGGAGCTGCTACAAATGCAATAATAAACACAGTTG 1322 Query 68740 GTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTC 68799 |||| | | || ||||||||||| | || || |||||||||| ||| | ||||| Sbjct 1321 -TTGCAGTTAAAAGAGTAGGGATCATTAAAACACCAAACCAACCAATGTAGATACGGTTT 1263 Query 68800 TCTGTGGAAGTCACCCATTCGCAGAA 68825 || || ||||| ||||| || || || Sbjct 1262 TCAGTTGAAGTTACCCACTCACAAAA 1237 >seq7 Length=22195 Score = 585 bits (648), Expect = 3e-162 Identities = 748/1028 (73%), Gaps = 2/1028 (0%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| || | || || || |||||||||| |||||||| || | Sbjct 5128 ATTAAAGAGCGTTTCCACGTGGTAATACCTCCTCAGGGAATACAATTTTTTCATGTGGCT 5069 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || |||| ||||||||||| |||||| || || |||||||| |||||||| | Sbjct 5068 GATCTTGAGCAGCCATCCATGCACGAATACCTTCGTTTAAAAGAATGTTTTTTGTGTAAA 5009 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || || || ||||||||||| | || ||||| ||||| || || ||||| | Sbjct 5008 AAGTCTCAAATTCAGGATCTTCTGCTGCACGAATTTCTTGAGATACGAAATCGTAAGCTC 4949 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | || || | || | ||| | || ||| | | ||| |||| | ||| | || || | Sbjct 4948 GTAGATTTAATGCTAAACCTACAACACCAAGTGCACTCATCCATAAACCAGTTACTGGCA 4889 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| |||||||| || || | ||| | || || ||| || | ||||||||| |||| Sbjct 4888 CAAATAACATAAAAAAGTGAAGCCATCGTTTGTTTGAAAAAGCTACACCAAAGATTTGAG 4829 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 ||||||| || || || || || | ||||| |||||||| ||||||| | || |||| Sbjct 4828 ACCAGAAACGATTAGCTGTCACGAAAGAGTACGTTTCTTCTGCTTGAGTTGGGTTAAATG 4769 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | |||||||||||| |||||||||||| | ||||| || || || || |||| | Sbjct 4768 CACGGAAAGTGTTTGCACCATCACCATCTTCAAAAAGAGTGTTTTCAACAGTTGCACCGT 4709 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| ||| ||||||| ||| |||| | | ||| ||||| |||||||| || || |||| Sbjct 4708 GAATCGCACAAAGCAAAGCAGCACCTAATACACCAGCTACTCCCATCATGTGGAAAGGGT 4649 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 | || |||||||| ||||||||||| | || |||| |||||||||||||| | | | Sbjct 4648 TTAAAGTCCAGTTGTGGAATCCTTGGAAAAAAAGAATGAATCGAAAGATTGAAGCAATAC 4589 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| ||||| |||||||||| || ||||| | ||||| || | ||| ||| || Sbjct 4588 CAAAACTAGGAGCAAAAAACCAACCAGACTGACCTAACGGGTAAATTAAAAAAACAGAAA 4529 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGA-TGAGA 67244 |||||||||| ||||| | || ||||||||||||||||| ||||| | | | ||| | Sbjct 4528 CAAAAACAGCAATAGGTGCTGAAAACGCAATAGCATTGTAAGGACGAAGTCTTACTGA-A 4470 Query 67245 CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCC 67304 || || | |||||| ||||| | ||| |||||||||| ||| ||||| || || || || Sbjct 4469 CGAGCAATTTCAAATTGGCGTAACATAAAACCAATTAAAGCAAAAGCTCCATGAAGAGCT 4410 Query 67305 ACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGA 67364 ||||| ||| || || || | ||| | ||| || ||||| |||| || || Sbjct 4409 ACAAATGCCCAAAGCCCGCCTAATTGAAACCAACGAGTAAAATCAGATTGAGCTTCTGGT 4350 Query 67365 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTG 67424 |||||||| | | | ||||||||||||| | || || ||||| || || || || Sbjct 4349 CCCCAAAGAAACAATAAAGAATGACCCATACTGTTTGCTGGAGTTGAAACTGCAGCAGTT 4290 Query 67425 AGAAAATTAGCACCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGACA 67484 | |||||| ||| || || |||||| || | |||||||| ||||| || ||| Sbjct 4289 AAGAAATTACAACCTTCTAGGAAACTAGTTGCTAAACCGTGAGTATACCAAGAAGTTACA 4230 Query 67485 AACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGTAGT 67544 || ||| | ||||| | ||| ||||| | || | ||| || || ||||| || | || Sbjct 4229 AAAGTAATCCCAGTTAACCATCCACCTAAAGCAAGATATGCTGTAGGAAAGAGTAATAAA 4170 Query 67545 CCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATCAAGGACATCGAAC 67604 || |||||||| ||||| ||||| || || || | ||| ||||| | ||| ||| Sbjct 4169 CCTGACCAACCTACAAAAACAAAACGGTCGCGGCGTACCCAATCATCTACTGTATCAAAC 4110 Query 67605 CACCCCCG 67612 || || || Sbjct 4109 CAACCACG 4102 Score = 98.7 bits (108), Expect = 1e-15 Identities = 62/67 (93%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 |||||||||||||| ||||||||||||||||||||||||||||||| ||||| || ||| Sbjct 19763 CTCCCCAGGTAGGACTTGAACCTACGACCAATCGATTAACAGTCGAGCGCTCTACCACTG 19704 Query 35571 AGCTACT 35577 ||||||| Sbjct 19703 AGCTACT 19697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572049558989640