Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq264 86.0 1e-11 >seq264 Length=364395 Score = 86.0 bits (94), Expect = 1e-11 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | || || || |||||||| | || | ||| || || || Sbjct 31803 AATTTGCATGCCACCACGCAGACGCAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTT 31744 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| | || || | ||| || || || || || ||||| || | | ||| || Sbjct 31743 GTAGTCAGCCAAGGTGCGGCCATCCTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTG 31684 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||||| || || || || || || || |||| || | ||| || || || || Sbjct 31683 GTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCTGA 31624 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||| || | ||| || || || || || | || || ||||| |||||||| Sbjct 31623 AGACTCAACCTCCAAAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATTTGCAT 31567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899646786674640