Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq26 738 0.0 seq7 610 7e-170 >seq26 Length=15232 Score = 738 bits (818), Expect = 0.0 Identities = 757/986 (77%), Gaps = 2/986 (0%) Strand=Plus/Plus Query 150838 CTTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCT 150897 ||||||||| ||||| || || ||| | |||||| | || | |||||||| ||||| | Sbjct 1236 CTTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTTGGTGTTTT 1295 Query 150898 GATGATTCCAACTCTGTTGGCAGCAACCATTTGCTTCATCGTGGCATTCATCGCTGCTCC 150957 ||||| || ||||| || | ||||| | | || || | ||||| | || ||||| Sbjct 1296 AATGATCCCTACTCTTTTAACTGCAACAACTGTGTTTATTATTGCATTTGTAGCAGCTCC 1355 Query 150958 CCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAA 151017 |||||||||||||| || || ||||| || || ||||||| ||| ||||||| ||||| Sbjct 1356 TCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTACGGAAACAA 1415 Query 151018 CATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCAT 151077 ||| ||||||||||||||||||||| |||| || || || ||| | |||||||| || || Sbjct 1416 CATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTTCTACCCAAT 1475 Query 151078 CTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 151137 |||||||||||| ||| | ||||| ||| | |||||||||||||||| |||| | ||||| Sbjct 1476 CTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGT 1535 Query 151138 CTTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAGTGGGAACTGTCTTACCG 151197 | |||||| | | ||| | | | |||||||| ||||| ||||| || |||| ||| Sbjct 1536 ATGCCACTTTTTCTTAGGTGTATGTTGCTACATGGGGCGTGAATGGGAGCTTTCTTTCCG 1595 Query 151198 CTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTGCGAGTG 151256 || |||||||| || ||||| ||| || || |||||||| |||||||| ||||| | || Sbjct 1596 TTTAGGTATGCGCCCTTGGAT-TGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 1654 Query 151257 CAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGTA 151316 | |||||| | |||| ||| |||||||||| ||||| ||| | |||||| | |||| Sbjct 1655 CTGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCCCTTAGGTA 1714 Query 151317 TTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCACC 151376 | || || || || |||| ||| |||| |||||||| ||||||||||| | ||||||| Sbjct 1715 TCTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTTAATGCACC 1774 Query 151377 CCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCACG 151436 | ||||| ||| | ||||| || ||||| || ||||| || || ||||| || ||||| | Sbjct 1775 CTTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGCTATGCATG 1834 Query 151437 GTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTATG 151496 |||| | || ||||| || | | ||||| || || || ||| | || ||| | | Sbjct 1835 GTTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGCTAACGAAG 1894 Query 151497 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTTG 151556 ||||||| ||||||||||||||||| || |||||||| ||||| || ||||||||||||| Sbjct 1895 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGGTTACTTTG 1954 Query 151557 GTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCG 151616 | ||| | || |||||||||||||| |||||||| || ||||| | ||||||||| | | Sbjct 1955 GGCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTTCTTCTTAG 2014 Query 151617 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTCA 151676 | |||||||| || || || |||||||| ||||| | ||| | || |||||||| | Sbjct 2015 CTGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTATGGCATTTA 2074 Query 151677 ACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACA 151736 |||| |||||||||||||| ||||| || | | || ||| || || | |||| Sbjct 2075 ACCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGTAATTAACA 2134 Query 151737 CCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATG 151796 | ||||| ||| || | |||||||| || |||||||| || |||||||| ||||| | Sbjct 2135 CATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGAACGTAACG 2194 Query 151797 CTCACAACTTCCCTCTCGACCTTGCT 151822 ||||||||||||| || ||| | ||| Sbjct 2195 CTCACAACTTCCCACTTGACTTAGCT 2220 >seq7 Length=22195 Score = 610 bits (676), Expect = 7e-170 Identities = 754/1025 (74%), Gaps = 12/1025 (1%) Strand=Plus/Plus Query 152353 GGGTGGTTTGATGTCCTGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGG 152412 || ||||||||| | ||||| ||| | | |||||||| |||||||| |||||| Sbjct 4105 GGTTGGTTTGATACAGTAGATGATTGGGTACGCCGCGACCGTTTTGTTTTTGTAGGTTGG 4164 Query 152413 TCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACT 152472 || || | | || ||||| || || ||||||||| | || || ||| | ||||||| | Sbjct 4165 TCAGGTTTATTACTCTTTCCTACAGCATATCTTGCTTTAGGTGGATGGTTAACTGGGATT 4224 Query 152473 ACTTTCGCGACGAGTTGGTATACTCACGGGTTGGCAA----GTTCCTATCTGGAGGGCGC 152528 ||||| | || ||||||||||||||| || |||| |||||| | ||| | Sbjct 4225 ACTTTTGTAACTTCTTGGTATACTCACGGTTTAGCAACTAGTTTCCTA---GAAGGTTGT 4281 Query 152529 AAACTTTCTT-ACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGC 152587 || |||||| ||||| |||||||| ||||||||| | ||||||||||||| | || Sbjct 4282 AA--TTTCTTAACTGCTGCAGTTTCAACTCCAGCAAACAGTATGGGTCATTCTTTATTGT 4339 Query 152588 TTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCT 152647 |||| ||||| || || |||||| ||||| | ||| |||| | || || || | Sbjct 4340 TTCTTTGGGGACCAGAAGCTCAATCTGATTTTACTCGTTGGTTTCAATTAGGCGGGCTTT 4399 Query 152648 GGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTG 152707 |||| ||||| || || || || ||||| ||| |||| ||||| ||| | ||||| |||| Sbjct 4400 GGGCATTTGTAGCTCTTCATGGAGCTTTTGCTTTAATTGGTTTTATGTTACGCCAATTTG 4459 Query 152708 AACTGGCACGTCTCA-TCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATC 152766 || | || ||| ||| | | | ||||| ||||||||||||||||| || | ||||| Sbjct 4460 AAATTGCTCGT-TCAGTAAGACTTCGTCCTTACAATGCTATTGCGTTTTCAGCACCTATT 4518 Query 152767 GCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCT 152826 |||||||||||| || ||| | || ||||| | ||||| || |||||||||| ||| Sbjct 4519 GCTGTTTTTGTTTCTGTTTTTTTAATTTACCCGTTAGGTCAGTCTGGTTGGTTTTTTGCT 4578 Query 152827 CCATCTTTCGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAAC 152886 || ||| || | || ||||||| |||||| |||| || | ||||||||||||||| Sbjct 4579 CCTAGTTTTGGTATTGCTTCAATCTTTCGATTCATTCTTTTTTTCCAAGGATTCCACAAC 4638 Query 152887 TGGACATTGAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTT 152946 ||||| || || || || || |||||||| || || ||| | || || | || |||||| Sbjct 4639 TGGACTTTAAACCCTTTCCACATGATGGGAGTAGCTGGTGTATTAGGTGCTGCTTTGCTT 4698 Query 152947 TCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAAC 153006 | ||| ||||| |||| || || || || ||| | | | |||||||||| |||||| Sbjct 4699 TGTGCGATTCACGGTGCAACTGTTGAAAACACTCTTTTTGAAGATGGTGATGGTGCAAAC 4758 Query 153007 ACTTTCAAAGCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAAC 153066 |||||| || || || ||||||| |||||| || || || | || || ||||| Sbjct 4759 ACTTTCCGTGCATTTAACCCAACTCAAGCAGAAGAAACGTACTCTTTCGTGACAGCTAAT 4818 Query 153067 CGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTT 153126 ||||||||||| || || ||||| | |||||| || ||||| |||||||| || ||| Sbjct 4819 CGTTTCTGGTCTCAAATCTTTGGTGTAGCTTTTTCAAACAAACGATGGCTTCACTTTTTT 4878 Query 153127 ATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCT 153186 ||| | ||||| || || | ||| | |||| | | |||| | | ||| | || Sbjct 4879 ATGTTATTTGTGCCAGTAACTGGTTTATGGATGAGTGCACTTGGTGTTGTAGGTTTAGCA 4938 Query 153187 CTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAA 153246 | ||||| || ||||||||||| |||||||||||||| | || |||||||||||||| Sbjct 4939 TTAAATCTACGAGCTTACGATTTCGTATCTCAAGAAATTCGTGCAGCAGAAGATCCTGAA 4998 Query 153247 TTTGAGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCA 153306 |||||||| || || || || || || ||||| ||||||||| ||||||| ||| |||| Sbjct 4999 TTTGAGACTTTTTACACAAAAAACATTCTTTTAAACGAAGGTATTCGTGCATGGATGGCT 5058 Query 153307 CCTGTTGACCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAAC 153366 || || || || ||||| || | || |||||||| |||||||| ||||| || ||| Sbjct 5059 GCTCAAGATCAGCCACATGAAAAAATTGTATTCCCTGAGGAGGTATTACCACGTGGAAAC 5118 Query 153367 GCTCT 153371 ||||| Sbjct 5119 GCTCT 5123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549617748820440