Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq26 677 0.0 seq7 396 3e-105 >seq26 Length=15232 Score = 677 bits (750), Expect = 0.0 Identities = 744/987 (75%), Gaps = 2/987 (0%) Strand=Plus/Plus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 ||||||||||||||||| || ||||| || || |||||| |||||||||||||||| ||| Sbjct 1237 TTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTTGGTGTTTTA 1296 Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCT-TGTTTCATTGTAGCATTCATCGCTGCTCC 72353 |||||||| |||| ||||||| | || ||||| ||| | ||||| | || ||||| Sbjct 1297 ATGATCCCTACTCTTTTAACTGCAACAACTGTGTTT-ATTATTGCATTTGTAGCAGCTCC 1355 Query 72354 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 72413 ||| || || |||||||| || | || ||||| | ||||| | || || || ||||| Sbjct 1356 TCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTACGGAAACAA 1415 Query 72414 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 72473 ||| |||||||||||||| ||||| ||||||| ||||| || ||||||||||| || || Sbjct 1416 CATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTTCTACCCAAT 1475 Query 72474 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTAT 72533 |||||||||||| || | || |||||||| || ||||| ||||||||||| |||||| | Sbjct 1476 CTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGT 1535 Query 72534 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 72593 | |||||| | | || | | | ||||||||| | | ||||| || || | | | Sbjct 1536 ATGCCACTTTTTCTTAGGTGTATGTTGCTACATGGGGCGTGAATGGGAGCTTTCTTTCCG 1595 Query 72594 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 72653 |||| ||| | |||||||| |||||| ||||| ||||| || | || || ||| Sbjct 1596 TTTAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 1655 Query 72654 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 72713 || ||| || | || || ||||||| || || || ||| |||||||| ||||||| Sbjct 1656 TGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCCCTTAGGTAT 1715 Query 72714 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 72773 ||||||||| || ||||| ||| | || |||||||| || |||||||| |||||||||| Sbjct 1716 CTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTTAATGCACCC 1775 Query 72774 CTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGG 72833 ||||| ||| |||||| |||||| | || |||||| ||| ||| ||| ||||| || Sbjct 1776 TTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGCTATGCATGG 1835 Query 72834 TTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGG 72893 |||| | || |||||||| ||||| | || ||||| |||||| | | ||| | || Sbjct 1836 TTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGCTAACGAAGG 1895 Query 72894 CTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGG 72953 || || ||||| |||||||||||||| || |||||||||||||| || || ||||| || Sbjct 1896 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGGTTACTTTGG 1955 Query 72954 TAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGC 73013 | || || ||||| || || || ||||||||||| ||||| |||||||||||| | || Sbjct 1956 GCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTTCTTCTTAGC 2015 Query 73014 TGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAA 73073 || || || ||||| | | ||||| || | | ||||| | || |||||||| || Sbjct 2016 TGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTATGGCATTTAA 2075 Query 73074 CCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAAC 73133 ||| ||||| |||||||| ||||||||||||||||| | | || | | || Sbjct 2076 CCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGTAATTAACAC 2135 Query 73134 ATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGC 73193 ||||| || || | ||| | || ||||| || ||||| || ||||| ||| | || || Sbjct 2136 ATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGAACGTAACGC 2195 Query 73194 ACACAACTTCCCACTAGACCTAGCATC 73220 |||||||||||||| ||| |||| || Sbjct 2196 TCACAACTTCCCACTTGACTTAGCTTC 2222 >seq7 Length=22195 Score = 396 bits (438), Expect = 3e-105 Identities = 702/1026 (68%), Gaps = 21/1026 (2%) Strand=Plus/Plus Query 73376 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 73435 ||||||||| || | || ||||| || || | || ||||| ||| | ||||| || Sbjct 4123 GATGATTGGGTACGCCGCGACCGTTTTGTTTTTGTAGGTTGGTCAGGTTTATTACTCTTT 4182 Query 73436 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 73495 ||| || || || || | || || ||||| || | |||||| || || || ||| Sbjct 4183 CCTACAGCATATCTTGCTTTAGGTGGATGGTTAACTGGGATTACTTTTGTAACTTCTTGG 4242 Query 73496 TACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTAACTGCAGCAGTA 73555 || || || ||| | ||| | | || || || ||||| |||||||| ||||| Sbjct 4243 TATACTCACGGTTTAGCAACTAGTTTCCTAGAAGGTTGTAATTTCTTAACTGCTGCAGTT 4302 Query 73556 TCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGACCAGAGGCACAA 73615 ||||| || | | |||||||||| | ||||||| |||||||||||||| || ||| Sbjct 4303 TCAACTCCAGCAAACAGTATGGGTCATTCTTTATTGTTTCTTTGGGGACCAGAAGCTCAA 4362 Query 73616 GGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGGA 73675 ||| || || |||||||||||||| || || ||| |||||||| | |||||| Sbjct 4363 TCTGATTTTACTCGTTGGTTTCAATTAGGCGGGCTTTGGGCATTTGTAGCTCTTCATGGA 4422 Query 73676 GTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATA 73735 | |||| | || ||||| ||| | | || ||||| ||||| | || | | Sbjct 4423 GCTTTTGCTTTAATTGGTTTTATGTTACGCCAATTTGAAATTGCTCGTTCAGTAAGACTT 4482 Query 73736 CGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACGAGCATCTTTCTA 73795 ||||||||||| || | || ||||||||| ||| || || || | ||| || Sbjct 4483 CGTCCTTACAATGCTATTGCGTTTTCAGCACCTATTGCTGTTTTTGTTTCTGTTTTTTTA 4542 Query 73796 ATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGCAATC 73855 || || || ||||| ||| | ||||||| || || ||| || ||| | || ||||| Sbjct 4543 ATTTACCCGTTAGGTCAGTCTGGTTGGTTTTTTGCTCCTAGTTTTGGTATTGCTTCAATC 4602 Query 73856 TTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCATATG 73915 ||||| | ||| | || | || || |||||||| ||| | || || || || ||| Sbjct 4603 TTTCGATTCATTCTTTTTTTCCAAGGATTCCACAACTGGACTTTAAACCCTTTCCACATG 4662 Query 73916 ATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAACAGTA 73975 ||||| ||||| ||| || | |||| || || || ||||| || || |||||||| || Sbjct 4663 ATGGGAGTAGCTGGTGTATTAGGTGCTGCTTTGCTTTGTGCGATTCACGGTGCAACTGTT 4722 Query 73976 CAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCTACAACT 74035 | ||||| | | |||||| || | | | | ||| | ||| Sbjct 4723 GAAAACACTCTTTTTGAAGA---------------TG--GTGATGGTGCAAAC----ACT 4761 Query 74036 TTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGATTACTGCTAACAGA 74095 ||| | ||||| | || || || | |||||| || || | | | || ||||| | Sbjct 4762 TTCCGTGCATTTAACCCAACTCAAGCAGAAGAAACGTACTCTTTCGTGACAGCTAATCGT 4821 Query 74096 TTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCTTATG 74155 |||||||| || || |||||| |||| |||||||||||| ||| | ||||| ||||| Sbjct 4822 TTCTGGTCTCAAATCTTTGGTGTAGCTTTTTCAAACAAACGATGGCTTCACTTTTTTATG 4881 Query 74156 TTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGCACTT 74215 || || || || || | ||| | |||| | | ||| | |||||| ||||| | Sbjct 4882 TTATTTGTGCCAGTAACTGGTTTATGGATGAGTGCACTTGGTGTTGTAGGTTTAGCATTA 4941 Query 74216 AACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTT 74275 || || |||| ||||| || ||||||||||| || | ||||||||||| || || ||| Sbjct 4942 AATCTACGAGCTTACGATTTCGTATCTCAAGAAATTCGTGCAGCAGAAGATCCTGAATTT 5001 Query 74276 GAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCT 74335 || || || ||||| || ||||||||| | || |||||||| | ||||||||| | || Sbjct 5002 GAGACTTTTTACACAAAAAACATTCTTTTAAACGAAGGTATTCGTGCATGGATGGCTGCT 5061 Query 74336 GTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCA 74395 ||||| || ||||| || |||| ||||| || || || || ||||| || ||||| Sbjct 5062 CAAGATCAGCCACATGAAAAAATTGTATTCCCTGAGGAGGTATTACCACGTGGAAACGCT 5121 Query 74396 CTATAA 74401 || ||| Sbjct 5122 CTTTAA 5127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572868752057160