Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq67 118 1e-20 seq319 86.0 8e-11 >seq67 Length=277217 Score = 118 bits (130), Expect = 1e-20 Identities = 194/280 (69%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 869172 TATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGC 869231 ||||| | ||||| || | ||||||| || ||||| || | ||| || ||||| | | Sbjct 72567 TATGCAAGCCTTCATCCCTGCTGATCAACTCATTGCTGAATGTGAGACCTGGCATCAATC 72508 Query 869232 CGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGG 869291 | |||||||| ||||| ||||||| |||||||||||| ||| ||| || || || Sbjct 72507 CTCGCTTCTTAAGCCAGAAGATGGAGCAGAAACTGCCGCTGAAGTGGATTCCTTCCACAC 72448 Query 869292 CGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCA 869351 |||||||| | ||||| || |||||| || | || || ||||| || Sbjct 72447 AAGCAAAGCCCACTAGCCGTTCTGCAAAGCTGGTGCTGC------TGCCAATCCAACGCA 72394 Query 869352 TCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGT 869411 | ||||| || ||||| | | |||| | ||||| |||| ||||| | || || || | Sbjct 72393 TGGCCCATTCCGCCTTGTGCTTCACACATGGCACTGTGTGAATGGCTTGGAACAGATGCT 72334 Query 869412 CCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 | | || | ||||||||||||| ||| | |||||| Sbjct 72333 GCCGCTGTGCTGAGTCCTTGACATAGTAGTCAAGCAGGAG 72294 >seq319 Length=97848 Score = 86.0 bits (94), Expect = 8e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 1574117 GGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCT 1574176 ||| || ||||| ||| || |||||||| | ||| |||||| || ||||||||||| Sbjct 84964 GGCTCAACAGGCACTGAGGAGAACCATGGAGATCTACAGCAACACCACACGCTTTGCCCT 85023 Query 1574177 GGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCG 1574236 ||| ||||| ||| | | ||||| ||| || | || |||||||| |||||| |||| Sbjct 85024 GGCCTGCAATCAGTCCACCAAAGTCATTGAGCCCATTCAGAGTCGCTGTGCCATTGTGCG 85083 Query 1574237 CT 1574238 || Sbjct 85084 CT 85085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107083642209609