Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq33 109 5e-19 seq264 105 6e-18 seq47 82.4 7e-11 >seq33 Length=490745 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || || || || || || || | ||||| || | | Sbjct 195943 ATGCAAATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTTTGGAAGTGGAGTCATCA 196002 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||| || ||||| || || || ||||| || || Sbjct 196003 GACACCATTGACAATGTCAAATCCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAG 196062 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||| || || ||||| |||||| | | || |||| || ||| Sbjct 196063 CAGCGGTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTTTGGCAGACTACAAC 196122 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| |||||||| || || || ||||| |||| |||| || ||| Sbjct 196123 ATTCAGAAGGAATCCACCCTCCATCTGGTGCTGCGTCTGCGTGGTGGC 196170 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || | | Sbjct 197307 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACAATCACACTGGAGGTGGAGTCATCA 197366 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || ||||| || || Sbjct 197367 GACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 197426 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||||||||| || || ||||| |||||| | | || | ||||| ||| Sbjct 197427 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTTTGGCTGATTACAAC 197486 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||| |||| | || |||| || ||| Sbjct 197487 ATCCAGAAGGAGTCCACCCTCCACCTGGTTCTTCGTCTGCGTGGTGGC 197534 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 ||| || ||||| || || || ||| |||||||||| || || |||||||||||| | Sbjct 196614 AGGTATCCCTCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCG 196673 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCG 24924 | || |||| || ||||| || ||||| || ||| | || |||||| |||| |||| Sbjct 196674 CACTTTGGCAGACTACAACATCCAGAAGGAGTCCACATTGCATTTGGTGCTGCGTCTGCG 196733 Query 24925 CGGAGGC 24931 |||||| Sbjct 196734 TGGAGGC 196740 >seq264 Length=364395 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | || || || || || || | || || || | | Sbjct 32439 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACCATCACTTTGGAGGTCGAGTCTTCA 32498 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || ||||| || || Sbjct 32499 GACACCATTGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAG 32558 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||||||||| || ||||||||||||||| | | || | || || ||| Sbjct 32559 CAGCGTCTGATCTTTGCTGGCAAACAGCTGGAGGATGGACGCACTCTGGCTGACTACAAC 32618 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| |||||||| || || ||| | |||||||| |||| || ||| Sbjct 32619 ATTCAGAAGGAATCCACCCTTCACCTTGTGTTGCGTCTGCGTGGTGGC 32666 >seq47 Length=350483 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 24794 CAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTG 24853 || ||||||||||| || || || ||||| || || | |||||||| || || ||| || Sbjct 106496 CAGGACAAAGAAGGCATTCCACCTGATCAGCAGCGCCTCATCTTTGCTGGCAAGCAGTTG 106437 Query 24854 GAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||||| || | || |||| || |||||||| |||||||| || |||| | ||| Sbjct 106436 GAGGATGGCAGGACTTTGGCAGACTACAACATTCAGAAGGAATCAACCTTACATCTTGTG 106377 Query 24914 TTG 24916 ||| Sbjct 106376 TTG 106374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449893792741560