Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq39 114 2e-19 seq67 111 2e-18 seq361 91.5 2e-12 seq386 87.8 3e-11 >seq39 Length=427513 Score = 114 bits (126), Expect = 2e-19 Identities = 171/240 (71%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||| || ||||||||||| |||||||| || |||||| ||||||| ||||| ||| Sbjct 391211 TGAACTTTGTCACGGCCTTGGTGCCCTCTGACACAGCGTGCTTGGCCAGCTCGCCTGGCA 391152 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG- 1485588 ||||||||| || || ||||||||||| | | | | ||||| |||| || || Sbjct 391151 GGATCAGGCGGACAGCTGTCTGGATCTCAC--GAGAAGTCACTGTTG-GCTTCTTGTTGT 391095 Query 1485589 --CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 || ||||| | | |||| | | || |||| ||||| || || |||| Sbjct 391094 ACCGAGCCAGAGAAGCAGTCTCGACGGCAATCTTCTCGAAGATGTCCGCGATGAAGGAGT 391035 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||| ||||||||| | || |||||| || |||||||||||||||||| | |||| Sbjct 391034 TCAGGATCGACATGGCCTTTGAGGAGATACCAGTGTCGGGGTGCACCTGCTTCAAGACCT 390975 >seq67 Length=277217 Score = 111 bits (122), Expect = 2e-18 Identities = 218/323 (67%), Gaps = 6/323 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||| || | |||||||| || ||||| || ||| || ||||| | || |||||| Sbjct 72559 CCTTCATCCCTGCTGATCAACTCATTGCTGAATGTGAGACCTGGCATCAATCCTCGCTTC 72500 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| ||||||| ||||||||||| ||| ||| || || || |||||| Sbjct 72499 TTAAGCCAGAAGATGGAGCAGAAACTGCCGCTGAAGTGGATTCCTTCCACACAAGCAAAG 72440 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 || || ||||| || ||||| || || || ||||| ||| ||||| Sbjct 72439 CCCACTAGCCGTTCTGCAAAGCTGGTGCTGC------TGCCAATCCAACGCATGGCCCAT 72386 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| | | |||| | ||||| |||| ||||| | || || || | | || Sbjct 72385 TCCGCCTTGTGCTTCACACATGGCACTGTGTGAATGGCTTGGAACAGATGCTGCCGCTGT 72326 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 | | ||||||||| ||| ||| | ||||| ||| |||| || | || || Sbjct 72325 GCTGAGTCCTTGACATAGTAGTCAAGCAGGAGACTGTACATCTCACTATGCACATTCTCA 72266 Query 794641 ATGGCGATCTGGAAGCCATAAAA 794663 || || |||||||||||||| || Sbjct 72265 ATAGCTATCTGGAAGCCATAGAA 72243 >seq361 Length=207279 Score = 91.5 bits (100), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || |||||||| ||||||||||| ||||| ||||||| || || ||| Sbjct 72863 TGAACTTGGTCACAGCCTTGGTGCCCTCTGAGACAGCGTGTTTGGCCAGCTCACCAGGCA 72804 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTC 1485557 ||||||||| || || ||||||||||| Sbjct 72803 GGATCAGGCGGACAGCAGTCTGGATCTC 72776 >seq386 Length=203426 Score = 87.8 bits (96), Expect = 3e-11 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 2073556 GCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGACTCGCCGTTGGTGCCC 2073615 || ||||| || ||||| | |||||||||||||| ||| || || | ||| ||||| ||| Sbjct 94671 GCAGTGTCATTGAAGACCCTGAGCATGGGCACAATGCCATTTGAGTTGCCATTGGTTCCC 94612 Query 2073616 GCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCCGCC 2073675 | |||| ||| | || | | |||||| ||| || || ||||| || || | Sbjct 94611 CGAATGTAGCTGCCTGTGGACCTGATGTTGTGCATGGCCAACCCAATGCCTCCAGCACTC 94552 Query 2073676 TTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCT 2073718 ||||| ||| || || | |||||| || || |||||||||| Sbjct 94551 TTGGATATGCATGCACATTCTTTCAGTGTGTCATAGATGCCCT 94509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916174384422203