Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq26 738 0.0 seq7 495 4e-135 seq17 84.2 2e-11 >seq26 Length=15232 Score = 738 bits (818), Expect = 0.0 Identities = 752/978 (77%), Gaps = 2/978 (0%) Strand=Plus/Plus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 || || |||||||||||||| || | |||||| | || |||||||||| ||||| | Sbjct 1237 TTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTTGGTGTTTTA 1296 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTG-CTTCATTGTTGCATTCGTAGCAGCACC 157169 ||||| || || | | | ||||| | ||| || ||| ||||||| |||||||| || Sbjct 1297 ATGATCCCTACTCTTTTAACTGCAAC-AACTGTGTTTATTATTGCATTTGTAGCAGCTCC 1355 Query 157170 TCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAA 157229 ||| || || |||||||||||||| || ||||| ||||||| || |||| || ||||| Sbjct 1356 TCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTACGGAAACAA 1415 Query 157230 CATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCAT 157289 ||| ||||||||||| ||||||||| ||||||| ||||| ||| | ||||||||||| || Sbjct 1416 CATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTTCTACCCAAT 1475 Query 157290 CTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGT 157349 |||||||||||| || | ||||||||| | |||||||||||||||| |||| | || || Sbjct 1476 CTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGT 1535 Query 157350 CTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 157409 | ||||| | | || | | | ||| ||||| ||||| ||||| ||||||| ||| Sbjct 1536 ATGCCACTTTTTCTTAGGTGTATGTTGCTACATGGGGCGTGAATGGGAGCTTTCTTTCCG 1595 Query 157410 TTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGC 157469 ||||||||||||||| ||||| ||| || ||||| |||||||| || ||||| | ||| Sbjct 1596 TTTAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 1655 Query 157470 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 157529 || ||| | |||| ||| |||||||||| ||||| || | |||||| | ||||| Sbjct 1656 TGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCCCTTAGGTAT 1715 Query 157530 CTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCC 157589 ||| ||||||||||||| |||| | || ||||| || |||||||| || | ||||| || Sbjct 1716 CTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTTAATGCACCC 1775 Query 157590 GTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGG 157649 ||||||||| | || ||||| || ||||| ||||| ||| | |||||||||||||| || Sbjct 1776 TTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGCTATGCATGG 1835 Query 157650 AAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAAACAGAGTCACAGAACTATGG 157709 | || ||||| || | | |||||||||||||| | | || ||| | || Sbjct 1836 TTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGCTAACGAAGG 1895 Query 157710 TTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTCGG 157769 |||||| ||||||||||||||||| || |||||||| |||||||| ||||||||||| || Sbjct 1896 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGGTTACTTTGG 1955 Query 157770 TCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTCGC 157829 || |||| |||||||||||||| ||||||||| | | | ||||||||| | || Sbjct 1956 GCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTTCTTCTTAGC 2015 Query 157830 CGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAA 157889 |||||||| || || || |||||||| ||||| | || || || |||||||| || Sbjct 2016 TGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTATGGCATTTAA 2075 Query 157890 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 157949 ||| |||||||||||||| ||||| || | | || ||| |||||||| | ||||| Sbjct 2076 CCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGTAATTAACAC 2135 Query 157950 CTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGC 158009 ||||| || | | ||||| ||| || |||||||| || ||||| || |||||||| Sbjct 2136 ATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGAACGTAACGC 2195 Query 158010 ACACAACTTCCCACTGGA 158027 |||||||||||||| || Sbjct 2196 TCACAACTTCCCACTTGA 2213 >seq7 Length=22195 Score = 495 bits (548), Expect = 4e-135 Identities = 726/1020 (71%), Gaps = 8/1020 (1%) Strand=Plus/Plus Query 158769 GGATGGTTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGG 158828 || |||||||| | | | || || ||| | || || ||||| |||||||| || ||| Sbjct 4105 GGTTGGTTTGATACAGTAGATGATTGGGTACGCCGCGACCGTTTTGTTTTTGTAGGTTGG 4164 Query 158829 TCTGGACTTCTTCTTCTACCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACG 158888 || || | | || | || || || ||||||||| | || || ||| | ||||| | Sbjct 4165 TCAGGTTTATTACTCTTTCCTACAGCATATCTTGCTTTAGGTGGATGGTTAACTGGGATT 4224 Query 158889 ACTTTCGCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTGAGGGTGCAAAC 158948 ||||| | || |||||||| || || | || ||| | || || ||| || Sbjct 4225 ACTTTTGTAACTTCTTGGTATACTCACGGTTTAGCAACTAGTTTCCTAGAAGGTTGTAA- 4283 Query 158949 TTTCTTA-CAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCT 159007 ||||||| | || |||||||| |||||||| | ||||||||||||| | || |||| Sbjct 4284 TTTCTTAACTGCTGCAGTTTCAACTCCAGCAAACAGTATGGGTCATTCTTTATTGTTTCT 4343 Query 159008 CTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGAA 159067 ||||| || || |||||| ||||| | ||| | ||| | || || || ||| Sbjct 4344 TTGGGGACCAGAAGCTCAATCTGATTTTACTCGTTGGTTTCAATTAGGCGGGCTTTGGGC 4403 Query 159068 TTTTGTGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACT 159127 ||||| || || || || || ||||| |||||||||| ||| | ||||| |||||| | Sbjct 4404 ATTTGTAGCTCTTCATGGAGCTTTTGCTTTAATTGGTTTTATGTTACGCCAATTTGAAAT 4463 Query 159128 GGCACGTCTCA-TCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTG 159186 || ||| ||| | | | ||||| ||||||||||||||||| || | |||||||||| Sbjct 4464 TGCTCGT-TCAGTAAGACTTCGTCCTTACAATGCTATTGCGTTTTCAGCACCTATTGCTG 4522 Query 159187 TTTTTGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGT 159246 ||||||| || || | || ||||| | |||||||| |||||||||| ||||| Sbjct 4523 TTTTTGTTTCTGTTTTTTTAATTTACCCGTTAGGTCAGTCTGGTTGGTTTTTTGCTCCTA 4582 Query 159247 CCTTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGA 159306 ||||| | || |||| || | ||| | || || | ||||| |||||||| |||| Sbjct 4583 GTTTTGGTATTGCTTCAATCTTTCGATTCATTCTTTTTTTCCAAGGATTCCACAACTGGA 4642 Query 159307 CACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTG 159366 | ||||||| ||||| ||||||||||| |||||| | |||||| || | || | || Sbjct 4643 CTTTAAACCCTTTCCACATGATGGGAGTAGCTGGTGTATTAGGTGCTGCTTTGCTTTGTG 4702 Query 159367 CTATTCATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCT 159426 | ||||| || | || |||||||| || | | || ||||| || |||||||| | Sbjct 4703 CGATTCACGGTGCAACTGTTGAAAACACTCTTTTTGAAGATGGTGATGGTGCAAACACTT 4762 Query 159427 TTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCT 159486 | || ||| | ||||||||| || || || || ||| | || || || || || | Sbjct 4763 TCCGTGCATTTAACCCAACTCAAGCAGAAGAAACGTACTCTTTCGTGACAGCTAATCGTT 4822 Query 159487 TCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGT 159546 ||||||| || ||||| || | || ||||| ||||| || |||||||| || ||||||| Sbjct 4823 TCTGGTCTCAAATCTTTGGTGTAGCTTTTTCAAACAAACGATGGCTTCACTTTTTTATGT 4882 Query 159547 TGTTTGTGCCTGTTATGGGTCTATGGA--CATCCAGTATTGGCATTATTGGTCTTGCTCT 159604 | |||||||| || | ||| |||||| | || |||| || | ||| | || | Sbjct 4883 TATTTGTGCCAGTAACTGGTTTATGGATGAGTGCA--CTTGGTGTTGTAGGTTTAGCATT 4940 Query 159605 CAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATT 159664 ||||| || |||||||||||||| |||||| || | |||||||||||||| ||||| Sbjct 4941 AAATCTACGAGCTTACGATTTCGTATCTCAAGAAATTCGTGCAGCAGAAGATCCTGAATT 5000 Query 159665 TGAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACC 159724 ||| || || ||||| || ||||||||| | || ||||| | ||||| ||| |||| | Sbjct 5001 TGAGACTTTTTACACAAAAAACATTCTTTTAAACGAAGGTATTCGTGCATGGATGGCTGC 5060 Query 159725 TGCTGATCAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGTAACGC 159784 | ||||| || |||||||| | | ||||| || || || ||||| | || ||||| Sbjct 5061 TCAAGATCAGCCACATGAAAAAATTGTATTCCCTGAGGAGGTATTACCACGTGGAAACGC 5120 >seq17 Length=65237 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/154 (73%), Gaps = 5/154 (3%) Strand=Plus/Minus Query 157322 ACAACGGTGGTCCTTTCCAACTGGTAGTCTTTCACTTCCTGATCGGCATCTATGC--CTA 157379 ||||||| ||| || |||| | || || | | | ||| | | || |||||| ||| Sbjct 34204 ACAACGGCGGTTTTTACCAATTAGTTGTATGTTATTTCTTT-TAGG--TCTATGTTGCTA 34148 Query 157380 TATGGGACGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTTGC 157439 |||| ||||| |||||||| |||| ||||||||||||||| | ||||| ||| | Sbjct 34147 CATGGTTCGTGAATGGGAACTCTCTTCCCGTTTAGGTATGCGTACTTGGATTGCTGTCCC 34088 Query 157440 CTACTCGGCACCAGTCGCTGCTGCGAGTGCAGTA 157473 ||||| |||||||| || ||||| | ||| ||| Sbjct 34087 CTACTATGCACCAGTTGCAGCTGCTACTGCTGTA 34054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545268985622160