Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq26 708 0.0 seq7 450 2e-121 >seq26 Length=15232 Score = 708 bits (784), Expect = 0.0 Identities = 750/981 (76%), Gaps = 7/981 (1%) Strand=Plus/Plus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 || || |||||||||||||| || | ||||| |||| | |||||||| || || | Sbjct 1237 TTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTTGGTGTTTTA 1296 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTG-CTTCATCGTCGCCTTCGTCGCTGCTCC 177676 ||||| || ||||| || | ||||| | ||| || || | || || || || ||||| Sbjct 1297 ATGATCCCTACTCTTTTAACTGCAAC-AACTGTGTTTATTATTGCATTTGTAGCAGCTCC 1355 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 177736 || |||||||||||||| || ||||| || || ||||||| || |||| || ||||| Sbjct 1356 TCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTACGGAAACAA 1415 Query 177737 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 177796 ||| ||||||||||| ||||| || |||| || ||||||||| | |||||||| || || Sbjct 1416 CATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTTCTACCCAAT 1475 Query 177797 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 177856 ||||||||| || || | ||||||||| | || ||||||||||||| |||| | || || Sbjct 1476 CTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGT 1535 Query 177857 CTTTCAC--TTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATAC 177914 | ||| || |||| | || | ||| || ||||| ||||| ||||| ||||| | | Sbjct 1536 ATGCCACTTTTTCTTAGGTGTATGT-TGC-TACATGGGGCGTGAATGGGAGCTTTCTTTC 1593 Query 177915 CGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCC 177974 ||| ||||||||||||| ||||| ||| || ||||||||||| |||||||| || | Sbjct 1594 CGTTTAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 1653 Query 177975 GCAGTCTTTCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGT 178034 || || || | |||| ||| |||||||||| || || || | |||||| | ||| Sbjct 1654 GCTGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCCCTTAGGT 1713 Query 178035 ATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCAC 178094 ||||| ||||||||||||| ||| ||||||||||||| || ||||| ||| | |||||| Sbjct 1714 ATCTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTTAATGCAC 1773 Query 178095 CCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAT 178154 || ||||||||| | |||||||| || ||||| ||||| ||||||||||||||||||||| Sbjct 1774 CCTTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGCTATGCAT 1833 Query 178155 GGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGTCCCAGAACTAT 178214 || | || ||||| || | ||||||| || || || | | || ||| | Sbjct 1834 GGTTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGCTAACGAA 1893 Query 178215 GGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTC 178274 |||||||| ||||| |||||||||||||| || ||||| || || || || |||||||| Sbjct 1894 GGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGGTTACTTT 1953 Query 178275 GGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTC 178334 || |||||||| |||||||| || || ||||||||||| ||||| | ||||||||| | Sbjct 1954 GGGCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTTCTTCTTA 2013 Query 178335 GCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTT 178394 || |||||||| ||||| || |||||||| || || | ||| |||| || ||||||||| Sbjct 2014 GCTGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTATGGCATTT 2073 Query 178395 AACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAAC 178454 ||||| || || |||||||| ||||| || | | ||| ||||| ||||| | ||| Sbjct 2074 AACCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGTAATTAAC 2133 Query 178455 ACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAAAGAAAT 178514 |||||||| ||| | |||||||||| || || ||||| || ||||||||| | || Sbjct 2134 ACATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGAACGTAA- 2192 Query 178515 AGCACATAACTTCCCGCTTGA 178535 || || |||||||| ||||| Sbjct 2193 CGCTCACAACTTCCCACTTGA 2213 >seq7 Length=22195 Score = 450 bits (498), Expect = 2e-121 Identities = 718/1024 (70%), Gaps = 10/1024 (1%) Strand=Plus/Plus Query 178933 GGCTGGTTCGATGTCTTGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGG 178992 || ||||| ||| | ||||| ||| | || || || ||||| ||||| |||||| Sbjct 4105 GGTTGGTTTGATACAGTAGATGATTGGGTACGCCGCGACCGTTTTGTTTTTGTAGGTTGG 4164 Query 178993 TCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACA 179052 || || | |||| |||| || || |||||||| | || || ||| | ||||||| Sbjct 4165 TCAGGTTTATTACTCTTTCCTACAGCATATCTTGCTTTAGGTGGATGGTTAACTGGGATT 4224 Query 179053 GCTTTTGTTACGAGTTGGTACACCCATGGTCTTGC---TAGTTCCTATCTTGAAGGTGCT 179109 ||||||| || |||||| || || ||| | || ||||| | || |||||| | Sbjct 4225 ACTTTTGTAACTTCTTGGTATACTCACGGTTTAGCAACTAGTTTC---CTAGAAGGTTGT 4281 Query 179110 AACTTTCTTA-CGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT 179168 || ||||||| | || || || || || || || | ||||||||||||| | | | Sbjct 4282 AA-TTTCTTAACTGCTGCAGTTTCAACTCCAGCAAACAGTATGGGTCATTCTTTATTGTT 4340 Query 179169 ACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATG 179228 |||||||| || || |||| |||| || |||| ||| | || || || || Sbjct 4341 TCTTTGGGGACCAGAAGCTCAATCTGATTTTACTCGTTGGTTTCAATTAGGCGGGCTTTG 4400 Query 179229 GAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGA 179288 | || || ||||| || || || || || ||||||| || ||| | || || ||||| Sbjct 4401 GGCATTTGTAGCTCTTCATGGAGCTTTTGCTTTAATTGGTTTTATGTTACGCCAATTTGA 4460 Query 179289 ACTGGCACGTCTCA-TCGGTATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTG 179347 | | || ||| ||| | | | |||||||||||||| ||||| ||| | | ||||||| Sbjct 4461 AATTGCTCGT-TCAGTAAGACTTCGTCCTTACAATGCTATTGCGTTTTCAGCACCTATTG 4519 Query 179348 CCGTATTCGTTAGTGTATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGC 179407 | || || ||| ||| ||| | || ||||| | || || || ||||||| ||||| | Sbjct 4520 CTGTTTTTGTTTCTGTTTTTTTAATTTACCCGTTAGGTCAGTCTGGTTGGTTTTTTGCTC 4579 Query 179408 CATCGTTTGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACT 179467 | |||||| |||| | |||||| ||||| | ||||| || ||||| |||||||||| Sbjct 4580 CTAGTTTTGGTATTGCTTCAATCTTTCGATTCATTCTTTTTTTCCAAGGATTCCACAACT 4639 Query 179468 GGACACTCAACCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCT 179527 |||| | ||||| || |||||||||||||| || ||| | | |||| |||| |||| | Sbjct 4640 GGACTTTAAACCCTTTCCACATGATGGGAGTAGCTGGTGTATTAGGTGCTGCTTTGCTTT 4699 Query 179528 CTGCTATTCATGGAGTAACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACA 179587 ||| ||||| || | |||||| || || || | | ||||||||| || ||||||| Sbjct 4700 GTGCGATTCACGGTGCAACTGTTGAAAACACTCTTTTTGAAGATGGTGATGGTGCAAACA 4759 Query 179588 CATTTAAAGCGTTCGACTCTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACC 179647 | || || || || | || |||| || || || || ||| | || ||||| || | Sbjct 4760 CTTTCCGTGCATTTAACCCAACTCAAGCAGAAGAAACGTACTCTTTCGTGACAGCTAATC 4819 Query 179648 GTTTTTGGTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTA 179707 |||| ||||| || ||||| || || | ||| || || || ||| | ||||| |||| Sbjct 4820 GTTTCTGGTCTCAAATCTTTGGTGTAGCTTTTTCAAACAAACGATGGCTTCACTTTTTTA 4879 Query 179708 AGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTC 179767 | | ||||| || || | ||| | ||| | | | |||| | | || |||| Sbjct 4880 TGTTATTTGTGCCAGTAACTGGTTTATGGATGAGTGCACTTGGTGTTGTAGGTTTAGCAT 4939 Query 179768 TTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGT 179827 | ||||| || ||||| ||||| || |||||| || | ||||||||||||||||| | Sbjct 4940 TAAATCTACGAGCTTACGATTTCGTATCTCAAGAAATTCGTGCAGCAGAAGATCCTGAAT 4999 Query 179828 TCGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCAC 179887 | ||||| || || ||||| ||||||||| | || ||||| | ||||| ||| |||| Sbjct 5000 TTGAGACTTTTTACACAAAAAACATTCTTTTAAACGAAGGTATTCGTGCATGGATGGCTG 5059 Query 179888 CTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACG 179947 || ||||| ||||||||||| | | ||||| || || || |||| |||| |||| Sbjct 5060 CTCAAGATCAGCCACATGAAAAAATTGTATTCCCTGAGGAGGTATTACCACGTGGAAACG 5119 Query 179948 CACT 179951 | || Sbjct 5120 CTCT 5123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605662074541320