Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq33 125 7e-24 seq386 114 1e-20 seq264 113 4e-20 >seq33 Length=490745 Score = 125 bits (138), Expect = 7e-24 Identities = 151/203 (74%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || |||||||| ||| ||| | | | ||||| |||||||||| Sbjct 197504 GGTGGACTCCTTCTGGATGTTGTAATCAGCCAAAGTGCGGCCA-TCCTCAAGCTGCTTGC 197446 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || ||||||||||| ||||| ||||| |||||||| ||||| || Sbjct 197445 CAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACT 197386 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||| | | |||||| || | |||| || ||||| ||||| | Sbjct 197385 TGACATTGTCAATGGTGTCTGATGACTCCACCTCCAGTGTGATTGTCTTGCCAGTCAGGG 197326 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | || || || ||||||||| || Sbjct 197325 TCTTGACAAAGATCTGCATGCCT 197303 Score = 109 bits (120), Expect = 5e-19 Identities = 151/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| || ||||| || ||| || | | | ||||| |||| Sbjct 196146 ATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAAAGTACGGCCA-TCCTCAAGCT 196088 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || | |||||||||||| ||||| || || |||||||| |||| Sbjct 196087 GCTTGCCAGCAAAGATCAACCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGAATCT 196028 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | |||| | |||| ||||| | | |||||| || | |||| ||| ||||| | Sbjct 196027 TGGATTTGACATTGTCAATGGTGTCTGATGACTCCACTTCCAAAGTGATGGTCTTGCCAG 195968 Query 133636 TCAGAGTTTTTACGAAAATCTGCATGGCT 133664 ||||||| || || || || |||||| || Sbjct 195967 TCAGAGTCTTGACAAAGATTTGCATGCCT 195939 >seq386 Length=203426 Score = 114 bits (126), Expect = 1e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 148820 GGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTC 148879 ||| || || || || ||||| || || | || || ||| | ||||||| || ||||| Sbjct 96882 GGCAATGGATGCCAGGTTGCAGACAGCTGATTCTTCAGGGCTGGTGTACTCCACAATCTC 96823 Query 148880 GGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCA 148939 | ||| ||||||||||| ||||| ||||| ||| | |||||| ||||| |||||| Sbjct 96822 AGTGCAGAGATTGCTGCACTTGATGGTGCCCAGGTTTTGCTGATTGGACTTGCGGTTGCA 96763 Query 148940 CGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGC 148982 |||||||||||||||||| || |||||| || |||||| Sbjct 96762 GCTGTCCTTGTACAGCATGTATGGGTTGCCAGTCTCAACCTGC 96720 >seq264 Length=364395 Score = 113 bits (124), Expect = 4e-20 Identities = 150/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| || ||| ||| | | | ||||| | || Sbjct 31770 ATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCA-TCCTCCAACT 31712 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || || ||||||||||| ||||||||||| |||||||| |||| Sbjct 31711 GCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCT 31652 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | || | ||||| | | ||| || || | |||| ||| ||||||| Sbjct 31651 TGGACTTGACATTGTCGATGGTGTCTGAAGACTCAACCTCCAAAGTGATGGTCTTGCCGG 31592 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 ||| || || || || || |||||| Sbjct 31591 TCAAGGTCTTGACAAAGATTTGCATG 31566 Score = 105 bits (116), Expect = 6e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| || ||||| || ||||| || ||| ||| | | | ||||| ||||| |||| Sbjct 32636 GGTGGATTCCTTCTGAATGTTGTAGTCAGCCAGAGTGCGTCCA-TCCTCCAGCTGTTTGC 32578 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || ||||||||||| ||||||||||| |||||||| ||||| || Sbjct 32577 CAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTAGACT 32518 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||| | | ||| || || | |||| ||| ||||| |||| | Sbjct 32517 TGACATTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGTCTTGCCAGTCAAGG 32458 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || || |||||| Sbjct 32457 TCTTGACAAAGATTTGCATG 32438 Score = 89.7 bits (98), Expect = 5e-13 Identities = 85/106 (80%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | |||||||| ||||| || ||||| ||| | | ||| ||| ||||||||| Sbjct 31207 AAATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGACC-GTCCTCGAG 31149 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 ||||||||| ||| | ||||| ||||||||||| ||||| || ||| Sbjct 31148 CTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGAATACCT 31103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483416709051480