Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq264 96.9 8e-15 >seq264 Length=364395 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || | || || || || ||||||||||| || || ||| ||| Sbjct 31570 CAAATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTTTGGAGGTTGAGTCTTCAGAC 31629 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || || || ||| || Sbjct 31630 ACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAG 31689 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || ||||||||||| ||||| | || ||||| || |||||| || Sbjct 31690 CGTCTGATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGCACCTTGGCTGACTACAACATC 31749 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||| || || Sbjct 31750 CAGAAGGAGTCCACCCTTCATCTGGT 31775 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || | || || || || ||||||||||| || || ||| ||| Sbjct 32442 CAAATCTTTGTCAAGACCTTGACTGGCAAGACCATCACTTTGGAGGTCGAGTCTTCAGAC 32501 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||| || || || || || || ||| || Sbjct 32502 ACCATTGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAG 32561 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || || ||| |||| |||||| | ||| |||| || |||||| | Sbjct 32562 CGTCTGATCTTTGCTGGCAAACAGCTGGAGGATGGACGCACTCTGGCTGACTACAACATT 32621 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || || || ||||||||||| ||| | || || Sbjct 32622 CAGAAGGAATCCACCCTTCACCTTGTGTTGCGTCTGCG 32659 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 204770 TGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 204829 |||||||||||||| ||||||| || ||||||||||| || | ||||| ||||||||| Sbjct 32413 TGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTACGACCATCCTCCAGCTGC 32354 Query 204830 TTTCCGGCGAAGATAAGCCGTTGTTG 204855 || || || ||||| || || || || Sbjct 32353 TTGCCAGCAAAGATCAGACGCTGCTG 32328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181810548812517