Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq26 594 2e-165 >seq26 Length=15232 Score = 594 bits (658), Expect = 2e-165 Identities = 721/974 (74%), Gaps = 10/974 (1%) Strand=Plus/Plus Query 19514 TGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCG 19573 ||||| ||||| || | |||||| | || |||| |||||||| | ||||| || Sbjct 1246 TGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTTGGTGTTTTAATGATCCCT 1305 Query 19574 TGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGA 19632 ||| | | || || | ||| || ||||||||||| | || ||||| || || || Sbjct 1306 ACTCTTTTAACTGCAACAA-CTGTGTTTATTATTGCATTTGTAGCAGCTCCTCCTGTGGA 1364 Query 19633 CATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATC 19692 ||| || || || || || || || || ||| ||| | || ||||||||||| || || Sbjct 1365 CATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTACGGAAACAACATTATCTC 1424 Query 19693 GGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGC 19752 || || || ||||| | ||||| || || |||||||||||||||| |||||||| Sbjct 1425 TGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTTCTACCCAATCTGGGAAGC 1484 Query 19753 TAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTT 19812 ||| | ||||| ||| | |||||||| || || | |||| | || || | |||||| Sbjct 1485 AGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGTATGCCACTT 1544 Query 19813 CCTCATTGGCATCTATGCT--TACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGA 19870 || | || | |||| | |||||||| || || ||||| ||| | || |||| Sbjct 1545 TTTCTTAGG--TGTATGTTGCTACATGGGGCGTGAATGGGAGCTTTCTTTCCGTTTAGGT 1602 Query 19871 ATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTT 19930 ||| | ||||||||| ||| || |||||||| || |||||||| || |||| || || Sbjct 1603 ATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTGTTC 1662 Query 19931 CTCGTCTACCCGTTTGGTC-AGGGTAGCTTCT-CCGATGCTATGCCTTTGGGTATCTCGG 19988 | ||||||| | |||| ||||| ||| | || | |||||| || |||||||| | Sbjct 1663 ATTATCTACCCTATCGGTCAAGGGT--CTTTTAGTGACGGTATGCCCTTAGGTATCTCAG 1720 Query 19989 GTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCC 20048 |||| || |||| ||| | ||||||||||| || || ||||| | |||||||| |||| Sbjct 1721 GTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTTAATGCACCCTTTCC 1780 Query 20049 ACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGC 20108 ||||| | ||||| || |||||||| ||||| || || ||| ||| ||||| ||||| Sbjct 1781 ACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGCTATGCATGGTTCAT 1840 Query 20109 TTGTTACGTCCTCGCTTGTGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACA 20168 | || || || || | | ||||| || ||||| | || | ||| | ||||||| Sbjct 1841 TAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGCTAACGAAGGTTACA 1900 Query 20169 AGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTT 20228 | || || ||||||||||| || || ||||| || || || || ||||||||||| |||| Sbjct 1901 AATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGGTTACTTTGGGCGTT 1960 Query 20229 TGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCT 20288 |||| ||||||||||||||||||||||| |||||| ||||||||||| | ||||| | Sbjct 1961 TGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTTCTTCTTAGCTGCAT 2020 Query 20289 GGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGA 20348 |||| || |||||||| ||||| |||| || || | || || ||||| ||||| || | Sbjct 2021 GGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTATGGCATTTAACCTAA 2080 Query 20349 ACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGG 20408 ||||||||||||||||||| || || | ||| | |||||||| ||| | || |||| Sbjct 2081 ACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGTAATTAACACATGGG 2140 Query 20409 CTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATA 20468 |||||||| |||| |||||||| || || | ||||| ||||| ||||| || ||||| | Sbjct 2141 CTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGAACGTAACGCTCACA 2200 Query 20469 ACTTCCCACTTGAC 20482 |||||||||||||| Sbjct 2201 ACTTCCCACTTGAC 2214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148827603509466