Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq26 572 5e-159 >seq26 Length=15232 Score = 572 bits (634), Expect = 5e-159 Identities = 710/969 (73%), Gaps = 2/969 (0%) Strand=Plus/Plus Query 28642 TGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCG 28701 ||||| ||||| || | |||||| | || |||| |||||||| | ||||| || Sbjct 1246 TGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTTGGTGTTTTAATGATCCCT 1305 Query 28702 TGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGA 28760 ||| | | || || | ||| || ||||||||||| | || || || || || || Sbjct 1306 ACTCTTTTAACTGCAACAA-CTGTGTTTATTATTGCATTTGTAGCAGCTCCTCCTGTGGA 1364 Query 28761 CATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATC 28820 ||| || || || || || || || |||| || | || ||||||||||| || || Sbjct 1365 CATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTACGGAAACAACATTATCTC 1424 Query 28821 GGGAGCCGTCGTACCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGC 28880 || || || || || | ||||| || || |||||||||||||||| |||||||| Sbjct 1425 TGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTTCTACCCAATCTGGGAAGC 1484 Query 28881 TAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTT 28940 ||| | ||||| ||| | |||||||| || || | |||| | || || | |||||| Sbjct 1485 AGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGTATGCCACTT 1544 Query 28941 CCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAAT 29000 || | || || | | |||||||| || || ||||| ||| | || |||| || Sbjct 1545 TTTCTTAGGTGTATGTTGCTACATGGGGCGTGAATGGGAGCTTTCTTTCCGTTTAGGTAT 1604 Query 29001 GAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCT 29060 | | || |||||| ||| || ||||| || || || ||||| || |||| || ||| | Sbjct 1605 GCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTGTTCAT 1664 Query 29061 CGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCAC 29120 ||||||| |||||||||| |||||||| |||| ||||| || ||||| ||||| || Sbjct 1665 TATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCCCTTAGGTATCTCAGGTAC 1724 Query 29121 CTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACAT 29180 || |||| ||| | || |||||||| || || ||||| | |||||||| |||||||| Sbjct 1725 TTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTTAATGCACCCTTTCCACAT 1784 Query 29181 GCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGT 29240 | | || ||||| || || || ||||| || || || ||| ||||| ||||| | || Sbjct 1785 GTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGCTATGCATGGTTCATTAGT 1844 Query 29241 CACGTCCTCGCTTGTGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTT 29300 || || || | | ||||| || ||||| || ||| ||| | |||||||| || Sbjct 1845 AACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGCTAACGAAGGTTACAAATT 1904 Query 29301 TGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGAT 29360 || ||||||||||| ||||| ||||| || || || |||||||||||||| |||||||| Sbjct 1905 CGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGGTTACTTTGGGCGTTTGAT 1964 Query 29361 CTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCC 29420 |||||||| ||||||||||| || |||||| ||||||||||| | ||||| ||||| Sbjct 1965 TTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTTCTTCTTAGCTGCATGGCC 2024 Query 29421 GGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGG 29480 || |||||||| ||||| |||| || || | || || ||||| ||||| || ||||| Sbjct 2025 AGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTATGGCATTTAACCTAAACGG 2084 Query 29481 TTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGA 29540 ||| ||||||||||| || || | ||| | |||||||| ||||| || |||||||| Sbjct 2085 TTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGTAATTAACACATGGGCTGA 2144 Query 29541 TGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTT 29600 || |||| || |||||||| || | || |||||||| || ||||| ||||| ||||| Sbjct 2145 CATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGAACGTAACGCTCACAACTT 2204 Query 29601 CCCACTTGA 29609 ||||||||| Sbjct 2205 CCCACTTGA 2213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146664420900242