Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq67 123 4e-22 seq39 91.5 2e-12 >seq67 Length=277217 Score = 123 bits (136), Expect = 4e-22 Identities = 240/350 (69%), Gaps = 7/350 (2%) Strand=Plus/Plus Query 1455963 AGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACAT 1456022 ||| |||||| || |||||||| | || || || |||||||| || || || || | Sbjct 72215 AGATGTCCAACTGGCAGAGGCAAGAGCATTCTATGGCTTCCAGATAGCTATTGAGAATGT 72274 Query 1456023 CCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGA 1456082 || ||| | ||| |||||| | ||| ||| ||||||||| | | || | | Sbjct 72275 GCATAGTGAGATGTACAGTCTCCTGCTTGACTACTATGTCAAGGACTCAGCACAGCGGCA 72334 Query 1456083 CCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGAT 1456142 || || || | ||||| |||| ||||| | |||| | | ||||| || ||||| || Sbjct 72335 GCATCTGTTCCAAGCCATTCACACAGTGCCATGTGTGAAGCACAAGGCGGAATGGGCCAT 72394 Query 1456143 GAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCC-GC 1456201 | ||||| || | || || |||||| || ||||| || |||||||| | Sbjct 72395 GCGTTGGATTGGCA-GCAGCACCAG----CTTTGCAGAACGGCTAGTGGGCTTTGCTTGT 72449 Query 1456202 GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGC 1456261 || || || ||| ||| |||||||||||| ||||||| ||||| |||||||| || Sbjct 72450 GTGGAAGGAATCCACTTCAGCGGCAGTTTCTGCTCCATCTTCTGGCTTAAGAAGCGAGGA 72509 Query 1456262 CTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 | ||||| |||| || || ||||| || || ||||| | || |||| Sbjct 72510 TTGATGCCAGGTC-TCACATTCAGCAATGAGTTGATCAGCAGGGATGAAG 72558 >seq39 Length=427513 Score = 91.5 bits (100), Expect = 2e-12 Identities = 158/226 (70%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 724918 AGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGA 724977 |||| | ||||||||||||||| || | | ||| ||| ||| ||||||||| Sbjct 390975 AGGTCTTGAAGCAGGTGCACCCCGACACTGGT-----ATC-TCCTCAAAGGCCATGTCGA 391028 Query 724978 TCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGG 725037 || ||||||| || || ||||| |||| || | | |||| | | | |||| Sbjct 391029 TCCTGAACTCCTTCATCGCGGACATCTTCGAGAAGATTGCCGTCGAGACTGCTTCTCTGG 391088 Query 725038 CGCGCTCCAACAAGC-GCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTG 725096 | || | ||||||| || | || | | || ||||||||||| || || |||||| Sbjct 391089 CTCGGTACAACAAGAAGCCA-ACAGTGACTTCTCGTGAGATCCAGACAGCTGTCCGCCTG 391147 Query 725097 ATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| ||| ||||| ||||||| |||||| || || |||||||||| Sbjct 391148 ATCCTGCCAGGCGAGCTGGCCAAGCACGCTGTGTCAGAGGGCACCA 391193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177745902105674