Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq264 125 6e-24 seq33 125 6e-24 >seq264 Length=364395 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| ||| | || |||||| || |||||||| || ||| Sbjct 31793 CCACCACGCAGACGCAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 31734 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || |||| |||||| || ||||| |||| ||||||||||| | ||| Sbjct 31733 AAGGTGCGGCCATCCTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGG 31674 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| ||||| ||| | | | | | ||||| || || ||| Sbjct 31673 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCAACC 31614 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || ||||| || || ||||| || ||||| Sbjct 31613 TCCAAAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATTTGCAT 31567 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | |||||| | || | || ||||| ||||||||||| || ||| Sbjct 32665 CCACCACGCAGACGCAACACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCC 32606 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||||||| || || ||||| |||| ||||||||||| | ||| Sbjct 32605 AGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGG 32546 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| ||||| ||| | | | | | ||||| || || ||| Sbjct 32545 ATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCGACC 32486 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || ||||| || || ||||| || ||||| Sbjct 32485 TCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 32439 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| | ||| |||||| || |||||||| || ||| Sbjct 32437 CCACCACGCAGACGAAGGACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCC 32378 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 ||||| || | || ||||||||||| || ||||| |||| ||||||||||| | ||| Sbjct 32377 AAGGTACGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 32319 >seq33 Length=490745 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| ||| | || ||||| ||||||||||| || ||| Sbjct 196169 CCACCACGCAGACGCAGCACCAGATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCC 196110 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || |||||||| || ||||| ||||||||||||||||| | |||| Sbjct 196109 AAAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCAGGAGGA 196050 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| ||||| || | | | | | ||||| || ||||| Sbjct 196049 ATACCCTCCTTGTCCTGAATCTTGGATTTGACATTGTCAATGGTGTCTGATGACTCCACT 195990 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || |||| ||| || ||||| || ||||| Sbjct 195989 TCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 195943 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| ||||| || || | || || |||||||| || ||||| Sbjct 197498 CTCCTTCTGGATGTTGTAATCAGCCAAAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAA 197439 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | ||||| || |||||||||| ||||| ||| | | | Sbjct 197438 GATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATT 197379 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || |||||||||| ||||| || || || |||| || || || Sbjct 197378 GTCAATGGTGTCTGATGACTCCACCTCCAGTGTGATTGTCTTGCCAGTCAGGGTCTTGAC 197319 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 197318 AAAGATCTGCAT 197307 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | | || ||||||||| || || |||||| || |||||||| || ||| Sbjct 196739 CCTCCACGCAGACGCAGCACCAAATGCAATGTGGACTCCTTCTGGATGTTGTAGTCTGCC 196680 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 || || || | || ||||||||||| || ||||| |||| ||||||||||| | ||| Sbjct 196679 AAAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 196621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450789785159160