Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq264 141 9e-29 seq33 131 2e-25 seq47 96.9 4e-15 >seq264 Length=364395 Score = 141 bits (156), Expect = 9e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||||||| ||||| || ||||||||||| |||||||||||||| | | ||| | Sbjct 32656 AGACGCAACACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAGAGTGCGT 32597 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||||||||| ||||| |||| ||||||||| || || || ||||| || Sbjct 32596 CCATCCTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCC 32537 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || ||||| ||| | ||||| || || || || || | ||| Sbjct 32536 TTGTCCTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTG 32477 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || || || || |||||||| Sbjct 32476 ATGGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 32439 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || |||| ||| || || || ||||| ||||| || ||||||||||| ||||| |||| | Sbjct 31784 AGACGCAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAA-GGTGCG 31726 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || | ||| ||||| ||||| |||| ||||||||| || || || ||||| || Sbjct 31725 GCCATCCTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTC 31666 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || ||||| || ||||| ||| | ||||| || || || || || | ||| Sbjct 31665 CTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCAACCTCCAAAGT 31606 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || || || || || |||||||| Sbjct 31605 GATGGTCTTGCCGGTCAAGGTCTTGACAAAGATTTGCAT 31567 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 ||||| ||||| |||||||||||||| ||| || || || |||||||| ||||| Sbjct 31535 GTGGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTACGACCATCCTCGAGCTGCTTGCCA 31476 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||||| |||||||||||||| || || || |||||| Sbjct 31475 GCAAAGATCAAACGCTGCTGGTCAGGTGGGATGCCT 31440 >seq33 Length=490745 Score = 131 bits (144), Expect = 2e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || |||| ||| || || || ||||||||||| |||||||||||||| ||||| || | Sbjct 196160 AGACGCAGCACCAGATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAA-AGTACG 196102 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || ||||| ||||| ||||| ||||| |||||||| || || || || || || Sbjct 196101 GCCATCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCAGGAGGAATACCCTC 196042 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || ||||| || |||||| ||| | ||||| || || ||||| || | ||| Sbjct 196041 CTTGTCCTGAATCTTGGATTTGACATTGTCAATGGTGTCTGATGACTCCACTTCCAAAGT 195982 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | ||| || || || |||||||| Sbjct 195981 GATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 195943 Score = 105 bits (116), Expect = 7e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| || |||||||| | ||| || ||||| ||||| |||||||||||||| || Sbjct 195941 CCTCCTCTCAGACGCAACACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCAGCA 195882 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||| ||||| |||| ||||||||| || || || Sbjct 195881 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGA 195822 Query 134607 ATGCCT 134612 |||||| Sbjct 195821 ATGCCT 195816 Score = 102 bits (112), Expect = 8e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||||||| || || || || ||||| ||||| || |||||||||||| || Sbjct 195595 CCTCCGCGAAGTCGCAGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCA 195536 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || ||||| ||||| |||||||||||||||||||| || || || Sbjct 195535 AGTGTACGTCCGTCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCAGGTGGG 195476 Query 134607 ATGCCT 134612 |||||| Sbjct 195475 ATGCCT 195470 >seq47 Length=350483 Score = 96.9 bits (106), Expect = 4e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 134493 CTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGT 134551 ||||| | |||||| || |||| || |||||||| |||||||||||||| ||||| | Sbjct 106366 CTGAGCCTCAACACAAGATGTAAGGTTGATTCCTTCTGAATGTTGTAGTCTGCCAAAGTC 106425 Query 134552 GTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCC 134611 || | || || | ||| ||||| ||||| || | ||||||||||| || || ||||| Sbjct 106426 CTGCCA-TCCTCCAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCAGGTGGAATGCC 106484 Query 134612 TTCTTTTTCTTG 134623 |||||| || || Sbjct 106485 TTCTTTGTCCTG 106496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505394123066040