Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq26 740 0.0 seq7 491 5e-134 >seq26 Length=15232 Score = 740 bits (820), Expect = 0.0 Identities = 760/987 (77%), Gaps = 6/987 (1%) Strand=Plus/Plus Query 159960 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 160019 || || |||||||||||||| || | ||||| |||| | |||||||| || || | Sbjct 1237 TTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTTGGTGTTTTA 1296 Query 160020 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 160078 ||||| || ||||| || | |||| || |||| || || | || || || || ||||| Sbjct 1297 ATGATCCCTACTCTTTTAACTGCAA-CAACTGTGTTTATTATTGCATTTGTAGCAGCTCC 1355 Query 160079 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 160138 ||||||||||||||||| || ||||| || || ||||||| || |||| || ||||| Sbjct 1356 TCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTACGGAAACAA 1415 Query 160139 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160198 ||| ||||||||||| |||||||| |||| || ||||||||| | |||||||| || || Sbjct 1416 CATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTTCTACCCAAT 1475 Query 160199 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 160258 ||||||||| || || | ||||||||| | || ||||||||||||| |||| | || || Sbjct 1476 CTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGT 1535 Query 160259 ATTTCAC--TTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATAC 160316 || ||| || |||| | || | ||| || ||||| ||||| ||||| ||||| | | Sbjct 1536 ATGCCACTTTTTCTTAGGTGTATGT-TGC-TACATGGGGCGTGAATGGGAGCTTTCTTTC 1593 Query 160317 CGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCT 160376 ||||||||||||||||| ||||| |||||| || ||||| ||||| || || || || Sbjct 1594 CGTTTAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 1653 Query 160377 GCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGT 160436 ||||| ||| | | || ||| |||||||||| ||||| || | |||||| | ||| Sbjct 1654 GCTGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCCCTTAGGT 1713 Query 160437 ATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCAT 160496 ||||| ||||||||||||| ||| ||||||||||||| || ||||| ||| | ||||| Sbjct 1714 ATCTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTTAATGCAC 1773 Query 160497 CCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCAC 160556 || ||||||||| | || ||||| || ||||| ||||| ||| | |||||||||||||| Sbjct 1774 CCTTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGCTATGCAT 1833 Query 160557 GGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTAC 160616 || | || ||||| ||| | | |||||||| ||||| | | || ||| | Sbjct 1834 GGTTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGCTAACGAA 1893 Query 160617 GGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTC 160676 ||||| || ||||||||||| ||||| || |||||||| || || || || |||||||| Sbjct 1894 GGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGGTTACTTT 1953 Query 160677 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTG 160736 || |||||||| |||||||| || || ||||||||||| ||||| | ||||||||| | Sbjct 1954 GGGCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTTCTTCTTA 2013 Query 160737 GCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTC 160796 || |||||||| ||||| || |||||||| |||||| | ||| | || |||||||| Sbjct 2014 GCTGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTATGGCATTT 2073 Query 160797 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAAC 160856 ||||| |||||||||||||| ||||| || | | || ||||||||||||| | ||| Sbjct 2074 AACCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGTAATTAAC 2133 Query 160857 ACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 160916 || ||||| ||| | | || |||||| || |||||||| || ||||| || |||||| Sbjct 2134 ACATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGAACGTAAC 2193 Query 160917 GCACACAACTTCCCACTCGACCTCGCT 160943 || |||||||||||||| ||| | ||| Sbjct 2194 GCTCACAACTTCCCACTTGACTTAGCT 2220 >seq7 Length=22195 Score = 491 bits (544), Expect = 5e-134 Identities = 728/1028 (71%), Gaps = 8/1028 (1%) Strand=Plus/Plus Query 161682 GGGTGGTTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGG 161741 || |||||||| | | | || || ||| | || || ||||| |||||||| || ||| Sbjct 4105 GGTTGGTTTGATACAGTAGATGATTGGGTACGCCGCGACCGTTTTGTTTTTGTAGGTTGG 4164 Query 161742 TCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACA 161801 || || | | || |||| || || ||||||||| | || || ||| | ||||| | Sbjct 4165 TCAGGTTTATTACTCTTTCCTACAGCATATCTTGCTTTAGGTGGATGGTTAACTGGGATT 4224 Query 161802 ACTTTCGCAACGAGCTGGTATACCCATGGTCTCGC---TAGTTCCTATCTTGAGGGTGCA 161858 ||||| | ||| |||||||| || ||| | || ||||| | || || ||| Sbjct 4225 ACTTTTGTAACTTCTTGGTATACTCACGGTTTAGCAACTAGTTTC---CTAGAAGGTTGT 4281 Query 161859 AACTTTCTTA-CAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCT 161917 || ||||||| | || ||||| |||||||| || ||||||||||||| | | | Sbjct 4282 AA-TTTCTTAACTGCTGCAGTTTCAACTCCAGCAAACAGTATGGGTCATTCTTTATTGTT 4340 Query 161918 TCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTG 161977 ||| ||||| || || |||||| ||||| || ||| | ||| | || || || || Sbjct 4341 TCTTTGGGGACCAGAAGCTCAATCTGATTTTACTCGTTGGTTTCAATTAGGCGGGCTTTG 4400 Query 161978 GAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGA 162037 | ||||| || || ||||| || || || ||||||| || ||| | || || ||||| Sbjct 4401 GGCATTTGTAGCTCTTCATGGAGCTTTTGCTTTAATTGGTTTTATGTTACGCCAATTTGA 4460 Query 162038 ACTGGCACGTCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGC 162097 | | || ||| | | | ||||| ||||||||||||||||| || | |||||||| Sbjct 4461 AATTGCTCGTTCAGTAAGACTTCGTCCTTACAATGCTATTGCGTTTTCAGCACCTATTGC 4520 Query 162098 TGTTTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCC 162157 ||||||||| || || | || ||||| || |||||||| |||||||||| ||||| Sbjct 4521 TGTTTTTGTTTCTGTTTTTTTAATTTACCCGTTAGGTCAGTCTGGTTGGTTTTTTGCTCC 4580 Query 162158 GTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTG 162217 ||||| | || |||||||| ||||| | | ||| | ||||||||||| ||||| Sbjct 4581 TAGTTTTGGTATTGCTTCAATCTTTCGATTCATTCTTTTTTTCCAAGGATTCCACAACTG 4640 Query 162218 GACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATC 162277 ||| | ||||| ||||| ||||||||||| |||||| || |||||| || | || | Sbjct 4641 GACTTTAAACCCTTTCCACATGATGGGAGTAGCTGGTGTATTAGGTGCTGCTTTGCTTTG 4700 Query 162278 TGCTATTCACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACAC 162337 ||| |||||||| | || |||||||| || | | || ||||| || |||||||| Sbjct 4701 TGCGATTCACGGTGCAACTGTTGAAAACACTCTTTTTGAAGATGGTGATGGTGCAAACAC 4760 Query 162338 CTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCG 162397 || || ||| | | || || | ||||| || || ||| | || || || || || Sbjct 4761 TTTCCGTGCATTTAACCCAACTCAAGCAGAAGAAACGTACTCTTTCGTGACAGCTAATCG 4820 Query 162398 CTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCAT 162457 |||||||| || ||||| ||| | || ||||| ||||| || |||||||| ||||| || Sbjct 4821 TTTCTGGTCTCAAATCTTTGGTGTAGCTTTTTCAAACAAACGATGGCTTCACTTTTTTAT 4880 Query 162458 GTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCT 162517 ||| |||||||| || | ||| |||||| | |||| || | ||| | || | Sbjct 4881 GTTATTTGTGCCAGTAACTGGTTTATGGATGAGTGCACTTGGTGTTGTAGGTTTAGCATT 4940 Query 162518 CAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTT 162577 || || || |||||||||||||| ||| || || | ||||||||||||||||| || Sbjct 4941 AAATCTACGAGCTTACGATTTCGTATCTCAAGAAATTCGTGCAGCAGAAGATCCTGAATT 5000 Query 162578 TGAAACGTTCTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACC 162637 ||| || || ||||| || |||||||| | || ||||| | ||||||||| | || | Sbjct 5001 TGAGACTTTTTACACAAAAAACATTCTTTTAAACGAAGGTATTCGTGCATGGATGGCTGC 5060 Query 162638 TGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGC 162697 | || || || ||||| || || | ||||| || || || | || | || ||||| Sbjct 5061 TCAAGATCAGCCACATGAAAAAATTGTATTCCCTGAGGAGGTATTACCACGTGGAAACGC 5120 Query 162698 CCTTTAAT 162705 ||||||| Sbjct 5121 TCTTTAAT 5128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559499265197400