Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq26 780 0.0 seq7 435 4e-117 seq17 95.1 2e-14 >seq26 Length=15232 Score = 780 bits (864), Expect = 0.0 Identities = 765/984 (78%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 174468 TTTTGTTCCTGGGTCACATCAACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTA 174527 |||||| ||||| || ||||| | || ||| | ||| | |||||||| |||||| || Sbjct 1237 TTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTTGGTGTTTTA 1296 Query 174528 ATGATTCCTACATTGTTAGCCGCAACTG-TATGTTTCATTATCGCTTTCGTGGGTGCTCC 174586 ||||| ||||| | ||| | ||||| | ||||| ||||| || || || | ||||| Sbjct 1297 ATGATCCCTACTCTTTTAACTGCAACAACTGTGTTT-ATTATTGCATTTGTAGCAGCTCC 1355 Query 174587 CCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAA 174646 || |||||||||||||| || ||||| ||||| ||||||| || |||| |||||||| Sbjct 1356 TCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTACGGAAACAA 1415 Query 174647 CATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAAT 174706 ||| ||||||||||| |||||||||| |||||| ||||| ||| |||||||||||||||| Sbjct 1416 CATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTTCTACCCAAT 1475 Query 174707 CTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGT 174766 |||||||||||| | | || || ||| | |||||||||||||||| |||| ||||||| Sbjct 1476 CTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGT 1535 Query 174767 CTTCCACTTCCTTATTGGTATCTACGCCTATATGGGACGTGAGTGGGAACTCTCTTATCG 174826 | |||||| | | ||| | | ||| ||||| ||||| ||||| || |||| || Sbjct 1536 ATGCCACTTTTTCTTAGGTGTATGTTGCTACATGGGGCGTGAATGGGAGCTTTCTTTCCG 1595 Query 174827 TTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGC 174886 |||||||||| | |||||||| |||||| |||||||||||||||||||| ||| | || Sbjct 1596 TTTAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 1655 Query 174887 AGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGCCCTTGGGTAT 174946 || ||| | |||| ||| |||||||||| || || |||| |||||||| ||||| Sbjct 1656 TGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCCCTTAGGTAT 1715 Query 174947 CTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATCTTGATGCACCC 175006 ||| || || || |||| ||| | || |||||||| || || |||||||| |||||||| Sbjct 1716 CTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTTAATGCACCC 1775 Query 175007 CTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGG 175066 ||||||||||| || || |||||||| || |||||||| | ||||| || |||||||| Sbjct 1776 TTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGCTATGCATGG 1835 Query 175067 TTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAGTCACAGAACTATGG 175126 |||| | || || || ||| | ||||||| |||||||| | | || ||| | || Sbjct 1836 TTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGCTAACGAAGG 1895 Query 175127 TTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATGGCTACTTCGG 175186 |||||| ||||| ||||||||||| || || ||||| || || || || || ||||| || Sbjct 1896 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGGTTACTTTGG 1955 Query 175187 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCACTTCTTCTTAGC 175246 |||||||| |||||||||||||| |||||||||||||| || | |||||||||||||| Sbjct 1956 GCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTTCTTCTTAGC 2015 Query 175247 CGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTCAA 175306 ||||||||||| || || |||||||| || || | ||| | || || |||||||| || Sbjct 2016 TGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTATGGCATTTAA 2075 Query 175307 CCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAACAC 175366 ||| || ||||||||||| ||||| || ||| | ||| |||||| | ||| | ||||| Sbjct 2076 CCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGTAATTAACAC 2135 Query 175367 CTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATGAGAGAAATGC 175426 ||||| || || | ||| | ||| || || ||||| |||||||| || | || || Sbjct 2136 ATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGAACGTAACGC 2195 Query 175427 ACACAACTTCCCACTAGATTTGGC 175450 |||||||||||||| || || || Sbjct 2196 TCACAACTTCCCACTTGACTTAGC 2219 >seq7 Length=22195 Score = 435 bits (482), Expect = 4e-117 Identities = 711/1020 (70%), Gaps = 8/1020 (1%) Strand=Plus/Plus Query 175845 GGGTGGTATGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGG 175904 || |||| ||||| | || || ||| | | | | || | ||| | ||| | || ||| Sbjct 4105 GGTTGGTTTGATACAGTAGATGATTGGGTACGCCGCGACCGTTTTGTTTTTGTAGGTTGG 4164 Query 175905 TCTGGATTACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACA 175964 || || ||| |||| |||| || || |||||||| | || || ||| | ||||| | Sbjct 4165 TCAGGTTTATTACTCTTTCCTACAGCATATCTTGCTTTAGGTGGATGGTTAACTGGGATT 4224 Query 175965 ACTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAAC 176024 |||||||| || |||||| || || ||| | || || | || || ||| ||| Sbjct 4225 ACTTTTGTAACTTCTTGGTATACTCACGGTTTAGCAACTAGTTTCCTAGAAGGTTGTAAT 4284 Query 176025 TTTCTCACAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT 176084 || | || || || || || ||||| || | ||||||||||||| | | | ||| Sbjct 4285 TTCTTAACTGCTGCAGTTTCAACTCCAGCAAACAGTATGGGTCATTCTTTATTGTTTCTT 4344 Query 176085 TGGGGTCCTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCC 176144 ||||| || ||| |||| || || || ||| | ||| | || ||||||||| | Sbjct 4345 TGGGGACCAGAAGCTCAATCTGATTTTACTCGTTGGTTTCAATTAGGCGGGCTTTGGGCA 4404 Query 176145 TTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTG 176204 ||||| ||||| || || || || ||| | ||||| || ||| | || || |||||| | Sbjct 4405 TTTGTAGCTCTTCATGGAGCTTTTGCTTTAATTGGTTTTATGTTACGCCAATTTGAAATT 4464 Query 176205 GCAAGACTCATTGGTA-TCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGT 176263 || | ||| | | | ||||| ||||| |||||||| || | ||||| ||||| Sbjct 4465 GCTCGT-TCAGTAAGACTTCGTCCTTACAATGCTATTGCGTTTTCAGCACCTATTGCTGT 4523 Query 176264 ATTTGTCAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTC 176323 ||||| ||| ||| | | ||||| ||||||| ||| ||||| ||||| || Sbjct 4524 TTTTGTTTCTGTTTTTTTAATTTACCCGTTAGGTCAGTCTGGTTGGTTTTTTGCTCCTAG 4583 Query 176324 CTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGAC 176383 |||||| | || |||||||| ||||| | | ||| | || || |||||||||||||| Sbjct 4584 TTTTGGTATTGCTTCAATCTTTCGATTCATTCTTTTTTTCCAAGGATTCCACAACTGGAC 4643 Query 176384 ACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGC 176443 | ||||| ||||| ||||||||||| |||||| || |||||| || | || | ||| Sbjct 4644 TTTAAACCCTTTCCACATGATGGGAGTAGCTGGTGTATTAGGTGCTGCTTTGCTTTGTGC 4703 Query 176444 AATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTT 176503 || || || | ||||||||||| || || | ||||||||| || ||||| || Sbjct 4704 GATTCACGGTGCAACTGTTGAAAACACTCTTTTTGAAGATGGTGATGGTGCAAACACTTT 4763 Query 176504 CACTGCGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTT 176563 | ||| || | | || || | ||||| || || || | || || || || || || Sbjct 4764 CCGTGCATTTAACCCAACTCAAGCAGAAGAAACGTACTCTTTCGTGACAGCTAATCGTTT 4823 Query 176564 CTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTT 176623 |||||| |||||||| || || || ||| || || || ||||||||||| |||||||| Sbjct 4824 CTGGTCTCAAATCTTTGGTGTAGCTTTTTCAAACAAACGATGGCTTCACTTTTTTATGTT 4883 Query 176624 GTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGT---ATTGGCATCATTGGGCTTGCTCT 176680 ||||| || || | ||| | ||| | ||| |||| | | || | || | Sbjct 4884 ATTTGTGCCAGTAACTGGTTTATGGAT---GAGTGCACTTGGTGTTGTAGGTTTAGCATT 4940 Query 176681 TAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTT 176740 ||||| || ||||| ||||| || ||||| ||| | ||||||||||||||||| || Sbjct 4941 AAATCTACGAGCTTACGATTTCGTATCTCAAGAAATTCGTGCAGCAGAAGATCCTGAATT 5000 Query 176741 TGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACC 176800 ||| ||||| |||||||| ||||| ||| | |||||||| | | ||||||||||| | Sbjct 5001 TGAGACTTTTTACACAAAAAACATTCTTTTAAACGAAGGTATTCGTGCATGGATGGCTGC 5060 Query 176801 TGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 | ||||| |||||||| | |||||||||| || || || |||| | || ||||| Sbjct 5061 TCAAGATCAGCCACATGAAAAAATTGTATTCCCTGAGGAGGTATTACCACGTGGAAACGC 5120 >seq17 Length=65237 Score = 95.1 bits (104), Expect = 2e-14 Identities = 113/152 (74%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 174739 ACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATA 174798 ||||||| ||| || |||| ||||||| | | ||| || | ||| | | ||| | Sbjct 34204 ACAACGGCGGTTTTTACCAATTAGTTGTATGTTATTTCTTT-TAGGTCTATGTTGCTACA 34146 Query 174799 TGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCAT 174858 ||| ||||| ||||||||||||| |||||||||||| | ||||||| ||| | | Sbjct 34145 TGGTTCGTGAATGGGAACTCTCTTCCCGTTTAGGTATGCGTACTTGGATTGCTGTCCCCT 34086 Query 174859 ACTCTGCACCAGTTGCAGCAGCTTCAGCAGTA 174890 ||| ||||||||||||||| ||| | || ||| Sbjct 34085 ACTATGCACCAGTTGCAGCTGCTACTGCTGTA 34054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729923422970760