Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq26 762 0.0 seq7 493 1e-134 seq262 84.2 2e-11 >seq26 Length=15232 Score = 762 bits (844), Expect = 0.0 Identities = 765/987 (78%), Gaps = 6/987 (1%) Strand=Plus/Plus Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438 || || |||||||||||||| || | ||||| |||| | |||||||| || || | Sbjct 1237 TTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTTGGTGTTTTA 1296 Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 158497 ||||| || ||||| || | |||| || |||| || || | || || || || ||||| Sbjct 1297 ATGATCCCTACTCTTTTAACTGCAA-CAACTGTGTTTATTATTGCATTTGTAGCAGCTCC 1355 Query 158498 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 158557 ||||||||||||||||| || ||||| || || ||||||| || |||| || ||||| Sbjct 1356 TCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTACGGAAACAA 1415 Query 158558 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 158617 ||| ||||||||||| ||||| || |||| || ||||||||| | |||||||| || || Sbjct 1416 CATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTTCTACCCAAT 1475 Query 158618 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 158677 ||||||||| || || | ||||||||| | || ||||||||||||| |||| | || || Sbjct 1476 CTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGT 1535 Query 158678 CTTTCAC--TTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATAC 158735 | ||| || |||| | || | ||| || ||||| ||||||||||| ||||| | | Sbjct 1536 ATGCCACTTTTTCTTAGGTGTATGT-TGC-TACATGGGGCGTGAATGGGAGCTTTCTTTC 1593 Query 158736 CGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCT 158795 || |||||||||||||| ||||| |||||| || ||||||||||| || || || || Sbjct 1594 CGTTTAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 1653 Query 158796 GCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGT 158855 ||||| ||| | |||| ||| |||||||||| ||||| || | |||||| | ||| Sbjct 1654 GCTGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCCCTTAGGT 1713 Query 158856 ATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCAC 158915 ||||| ||||||||||||| ||| ||||||||||||| || ||||||||| | |||||| Sbjct 1714 ATCTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTTAATGCAC 1773 Query 158916 CCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAT 158975 || ||||| ||| | |||||||| || ||||| ||||| ||||||||||||||||||||| Sbjct 1774 CCTTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGCTATGCAT 1833 Query 158976 GGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTAT 159035 || | || ||||| ||| | | |||||||| ||||| | | || ||| | Sbjct 1834 GGTTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGCTAACGAA 1893 Query 159036 GGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTC 159095 |||||||| ||||| |||||||||||||| || || || || || || || |||||||| Sbjct 1894 GGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGGTTACTTT 1953 Query 159096 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 159155 || |||||||| |||||||||||||| ||||||||||| ||||| || ||||||||| | Sbjct 1954 GGGCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTTCTTCTTA 2013 Query 159156 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTC 159215 ||||||||||| || || || |||||||| || || | || | ||||| |||||||| Sbjct 2014 GCTGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTATGGCATTT 2073 Query 159216 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 159275 ||||| |||||||||||||| ||||| || | | || ||| |||||||| | ||| Sbjct 2074 AACCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGTAATTAAC 2133 Query 159276 ACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 159335 || ||||| || | | |||||||| || |||||||| || ||||| || |||||| Sbjct 2134 ACATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGAACGTAAC 2193 Query 159336 GCACACAACTTCCCACTCGACCTTGCT 159362 || |||||||||||||| ||| | ||| Sbjct 2194 GCTCACAACTTCCCACTTGACTTAGCT 2220 >seq7 Length=22195 Score = 493 bits (546), Expect = 1e-134 Identities = 733/1031 (71%), Gaps = 14/1031 (1%) Strand=Plus/Plus Query 159893 GGGTGGTTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGG 159952 || |||||||| | | | || || ||| | || || ||||| |||||||| || ||| Sbjct 4105 GGTTGGTTTGATACAGTAGATGATTGGGTACGCCGCGACCGTTTTGTTTTTGTAGGTTGG 4164 Query 159953 TCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACA 160012 || || | | || |||| || || ||||||||| | || || ||| | ||||| | Sbjct 4165 TCAGGTTTATTACTCTTTCCTACAGCATATCTTGCTTTAGGTGGATGGTTAACTGGGATT 4224 Query 160013 ACTTTCGCAACGAGCTGGTATACCCATGGACTCGC---TAGTTCCTATCTTGAGGGTGCA 160069 ||||| | ||| |||||||| || || | || ||||| | || || ||| Sbjct 4225 ACTTTTGTAACTTCTTGGTATACTCACGGTTTAGCAACTAGTTTC---CTAGAAGGTTGT 4281 Query 160070 AACTTTCTTA-CAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCT 160128 || ||||||| | || ||||| |||||||| || ||||||||||||| | | | Sbjct 4282 AA-TTTCTTAACTGCTGCAGTTTCAACTCCAGCAAACAGTATGGGTCATTCTTTATTGTT 4340 Query 160129 TCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTG 160188 ||| ||||| || || |||||| ||||| | ||| | ||| | || || || || Sbjct 4341 TCTTTGGGGACCAGAAGCTCAATCTGATTTTACTCGTTGGTTTCAATTAGGCGGGCTTTG 4400 Query 160189 GAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGA 160248 | ||||| || || ||||| || || || ||||||| || ||| | || || ||||| Sbjct 4401 GGCATTTGTAGCTCTTCATGGAGCTTTTGCTTTAATTGGTTTTATGTTACGCCAATTTGA 4460 Query 160249 ACTGGCACGTCTCA-TCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTG 160307 | | || ||| ||| | | | ||||||||||||||||||||||| || | ||||||| Sbjct 4461 AATTGCTCGT-TCAGTAAGACTTCGTCCTTACAATGCTATTGCGTTTTCAGCACCTATTG 4519 Query 160308 CTGTCTTTGTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTC 160367 |||| ||||| || || | || ||||| || |||||||| |||||||||| |||| Sbjct 4520 CTGTTTTTGTTTCTGTTTTTTTAATTTACCCGTTAGGTCAGTCTGGTTGGTTTTTTGCTC 4579 Query 160368 CGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACT 160427 | ||||| | || |||||||| ||||| | | || | |||||||| ||||||| Sbjct 4580 CTAGTTTTGGTATTGCTTCAATCTTTCGATTCATTCTTTTTTTCCAAGGATTCCACAACT 4639 Query 160428 GGACGCTTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCA 160487 |||| | ||||| ||||| ||||||||||| |||||| || |||| | || |||| Sbjct 4640 GGACTTTAAACCCTTTCCACATGATGGGAGTAGCTGGTGTATTAGGTGCTGCTTTGCTTT 4699 Query 160488 GTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATA 160547 |||| || || || | ||||| || ||||| || | ||||||||| || ||||| | Sbjct 4700 GTGCGATTCACGGTGCAACTGTTGAAAACACTCTTTTTGAAGATGGTGATGGTGCAAACA 4759 Query 160548 CCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACC 160607 | || || ||| | | || || | |||||| || || ||| | || || || || | Sbjct 4760 CTTTCCGTGCATTTAACCCAACTCAAGCAGAAGAAACGTACTCTTTCGTGACAGCTAATC 4819 Query 160608 GCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCA 160667 | |||||||| || ||||| ||| | || ||||| ||||| || |||||||| ||||| | Sbjct 4820 GTTTCTGGTCTCAAATCTTTGGTGTAGCTTTTTCAAACAAACGATGGCTTCACTTTTTTA 4879 Query 160668 TGTTGTTTGTGCCTGTTATGGGTCTTTGGA--CATCCAGTATTGGCATTATTGGTCTTGC 160725 |||| |||||||| || | ||| | |||| | || |||| || | ||| | || Sbjct 4880 TGTTATTTGTGCCAGTAACTGGTTTATGGATGAGTGCA--CTTGGTGTTGTAGGTTTAGC 4937 Query 160726 TCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGA 160785 | ||||| || |||||||||||||| |||||| ||| | |||||||||||||| || Sbjct 4938 ATTAAATCTACGAGCTTACGATTTCGTATCTCAAGAAATTCGTGCAGCAGAAGATCCTGA 4997 Query 160786 ATTTGAGACCTTCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGC 160845 ||||||||| || ||||| || ||||| || | || ||||| | ||||||||| | || Sbjct 4998 ATTTGAGACTTTTTACACAAAAAACATTCTTTTAAACGAAGGTATTCGTGCATGGATGGC 5057 Query 160846 ACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAA 160905 || || || || ||||| || || | ||||| || || || | || | || || Sbjct 5058 TGCTCAAGATCAGCCACATGAAAAAATTGTATTCCCTGAGGAGGTATTACCACGTGGAAA 5117 Query 160906 CGCCCTTTAAT 160916 ||| ||||||| Sbjct 5118 CGCTCTTTAAT 5128 >seq262 Length=217181 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/222 (70%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 159539 GGACCAATACATTTTAGACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCG 159598 |||| ||||||| | ||||| ||||||||||| || | || || || || || || Sbjct 216358 GGACACATACATTCTTGACGCAGCTGAGGAAGCTGGCATCGACCTGCCATACTCTTGCCG 216417 Query 159599 TGCTGGTGCTTGTAGCACATGTGCTGGTAAGATTGAGAGCGGGACAG-TTGACCAAAGTG 159657 |||||| || || |||| ||||| ||||||||| || || || |||||| || | Sbjct 216418 TGCTGGAGCCTGCTCGTCATGCGCTGGCAAGATTGAG-GCTGGCGAGACTGACCAGAGCG 216476 Query 159658 ACCAATCTTTCTTGGACGATGATCAACTCGCTGAAGGATTTC-TTCTCACTTGTGTCTCC 159716 |||| || || |||||||| || ||| ||| | |||| | || || || || | Sbjct 216477 ACCAGTCATTTTTGGACGACAGCCAGGTCG-AGAACGGTTTCGTCCTGACCTGCGTGGCT 216535 Query 159717 TACCCTACATCAGACGTAACTATCTTAACCGAACAGGAGGAG 159758 ||||| || || || || ||| |||| | ||||||||| Sbjct 216536 TACCCAACCAGCGATGTCACGATCCAAACCCACCAGGAGGAG 216577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552468924692160