Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq26 785 0.0 seq7 542 3e-149 >seq26 Length=15232 Score = 785 bits (870), Expect = 0.0 Identities = 772/994 (78%), Gaps = 2/994 (0%) Strand=Plus/Plus Query 178852 TGGGAACAGTTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTC 178911 |||| || || || ||||||||||| || || | || ||| | || |||||||||| Sbjct 1228 TGGGCACGCTTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTT 1287 Query 178912 GGTGTGCTGATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGT 178970 ||||| | ||||| ||||| | | ||||||| | |||| || || |||| || || Sbjct 1288 GGTGTTTTAATGATCCCTACTCTTTTAACTGCAAC-AACTGTGTTTATTATTGCATTTGT 1346 Query 178971 AGCAGCACCTCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179030 |||||| ||||| || || || ||||| || ||||| || || ||||||| || |||| Sbjct 1347 AGCAGCTCCTCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTA 1406 Query 179031 TGGAAACAACATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTT 179090 ||||||||||| ||||||||||||||||| || | |||||| ||||||||| ||||||| Sbjct 1407 CGGAAACAACATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTT 1466 Query 179091 CTACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 179150 |||||| |||||||||||||| || | ||||||||| | || ||||||||||||| ||| Sbjct 1467 CTACCCAATCTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCA 1526 Query 179151 ACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACT 179210 | | || || | |||||| | | || | | | ||| ||||| ||||| ||||| || Sbjct 1527 ATTAGTTGTATGCCACTTTTTCTTAGGTGTATGTTGCTACATGGGGCGTGAATGGGAGCT 1586 Query 179211 TTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGC 179270 ||||| |||| |||||||||| || ||||| ||| || |||||||||||||| || || Sbjct 1587 TTCTTTCCGTTTAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGC 1646 Query 179271 TGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCC 179330 ||| | ||| || ||| | |||| ||| |||||||||| ||||| ||| | |||||| Sbjct 1647 TGCTACTGCTGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCC 1706 Query 179331 TCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCT 179390 | |||||||| ||||||||||||| ||| ||||||||||||| || ||||||||| | Sbjct 1707 CTTAGGTATCTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTT 1766 Query 179391 TATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGC 179450 |||||||| ||||| ||| | |||||||| || ||||| ||||| |||||||||||||| Sbjct 1767 AATGCACCCTTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGC 1826 Query 179451 TATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAGACAGAGTCACA 179510 |||||| || | || ||||| || | | |||||||||||||||| | || Sbjct 1827 TATGCATGGTTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGC 1886 Query 179511 GAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGG 179570 ||| | ||||| || ||||| ||||||||||| || || ||||| || || || || || Sbjct 1887 TAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGG 1946 Query 179571 CTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTT 179630 ||||| || |||||||| |||||||| || || || ||||||||||| ||||| ||||| Sbjct 1947 TTACTTTGGGCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTT 2006 Query 179631 CTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCAT 179690 |||| | ||||| ||||| || || || |||||||| |||||| | || | ||||| || Sbjct 2007 CTTCTTAGCTGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTAT 2066 Query 179691 GGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGT 179750 ||| || ||||| |||||||||||||| ||||| || | | ||| |||||| ||||| Sbjct 2067 GGCATTTAACCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGT 2126 Query 179751 CCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGA 179810 ||||||||||||| ||| | | |||||||| | |||||||| || ||||| || Sbjct 2127 AATTAACACATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGA 2186 Query 179811 GCGTAACGCACACAACTTCCCACTCGACCTTGCT 179844 |||||||| |||||||||||||| ||| | ||| Sbjct 2187 ACGTAACGCTCACAACTTCCCACTTGACTTAGCT 2220 >seq7 Length=22195 Score = 542 bits (600), Expect = 3e-149 Identities = 712/984 (72%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 180048 CGCGACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTT 180107 |||||||| ||||| ||||| || ||||| || || |||| |||| || || |||||| Sbjct 4138 CGCGACCGTTTTGTTTTTGTAGGTTGGTCAGGTTTATTACTCTTTCCTACAGCATATCTT 4197 Query 180108 GCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTT 180167 || | || || ||| | ||||| | ||||||| || |||||| || |||||| | Sbjct 4198 GCTTTAGGTGGATGGTTAACTGGGATTACTTTTGTAACTTCTTGGTATACTCACGGTTTA 4257 Query 180168 GCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTA-CGGCAGCTGTCTCGACGCCTGCTGA 180226 || || | || |||||| ||| ||||||| | || || || || || || || | Sbjct 4258 GCAACTAGTTTCCTAGAAGGTTGTAA-TTTCTTAACTGCTGCAGTTTCAACTCCAGCAAA 4316 Query 180227 CGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACG 180286 | ||||||||||||| | | | |||||||| || || |||| |||| || Sbjct 4317 CAGTATGGGTCATTCTTTATTGTTTCTTTGGGGACCAGAAGCTCAATCTGATTTTACTCG 4376 Query 180287 GTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAAT 180346 |||| ||| | || || || ||| || || ||||| || || || || || |||| Sbjct 4377 TTGGTTTCAATTAGGCGGGCTTTGGGCATTTGTAGCTCTTCATGGAGCTTTTGCTTTAAT 4436 Query 180347 TGGATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGC 180406 ||| |||||| ||||||| |||||| | || ||| | | | |||||||||||||| Sbjct 4437 TGGTTTTATGTTACGCCAATTTGAAATTGCTCGTTCAGTAAGACTTCGTCCTTACAATGC 4496 Query 180407 TATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGG 180466 |||||| || || | ||||| ||||| ||||| || ||| | || ||||| | || Sbjct 4497 TATTGCGTTTTCAGCACCTATTGCTGTTTTTGTTTCTGTTTTTTTAATTTACCCGTTAGG 4556 Query 180467 TCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACT 180526 |||||| ||||||| |||||||| |||||| | || |||||||| ||||| | || Sbjct 4557 TCAGTCTGGTTGGTTTTTTGCTCCTAGTTTTGGTATTGCTTCAATCTTTCGATTCATTCT 4616 Query 180527 CTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGG 180586 ||| | || || |||||||||||||| | ||||| ||||| ||||||||||| ||||| Sbjct 4617 TTTTTTCCAAGGATTCCACAACTGGACTTTAAACCCTTTCCACATGATGGGAGTAGCTGG 4676 Query 180587 TATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTA 180646 | || |||||| || ||||| | || || || || | |||||| || ||||| || | Sbjct 4677 TGTATTAGGTGCTGCTTTGCTTTGTGCGATTCACGGTGCAACTGTTGAAAACACTCTTTT 4736 Query 180647 TGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAAC 180706 ||||||||| || |||||||| || |||||| | |||| |||| || ||||| Sbjct 4737 TGAAGATGGTGATGGTGCAAACACTTTCCGTGCATTTAACCCAACTCAAGCAGAAGAAAC 4796 Query 180707 TTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAA 180766 |||||| | || || || || || |||||||| || ||||| ||| | || ||||| || Sbjct 4797 GTACTCTTTCGTGACAGCTAATCGTTTCTGGTCTCAAATCTTTGGTGTAGCTTTTTCAAA 4856 Query 180767 CAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTC 180826 ||| || |||||||| ||||| ||||| |||||||| || | ||| |||||| | Sbjct 4857 CAAACGATGGCTTCACTTTTTTATGTTATTTGTGCCAGTAACTGGTTTATGGATGAGTGC 4916 Query 180827 TATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGAT 180886 |||| || | ||| | || | || || || |||||||||||||| |||||| || Sbjct 4917 ACTTGGTGTTGTAGGTTTAGCATTAAATCTACGAGCTTACGATTTCGTATCTCAAGAAAT 4976 Query 180887 CAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGA 180946 | ||||||||||||||||| || ||||| || ||||| || ||||| || || || || Sbjct 4977 TCGTGCAGCAGAAGATCCTGAATTTGAGACTTTTTACACAAAAAACATTCTTTTAAACGA 5036 Query 180947 AGGACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGA 181006 ||| | ||||||||| |||| || ||||| ||||| ||||| | | |||||||| Sbjct 5037 AGGTATTCGTGCATGGATGGCTGCTCAAGATCAGCCACATGAAAAAATTGTATTCCCTGA 5096 Query 181007 AGAAGTTCTACCAAGAGGTAACGC 181030 || || ||||| | || ||||| Sbjct 5097 GGAGGTATTACCACGTGGAAACGC 5120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610324435085760