Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq350 105 8e-18 >seq350 Length=149706 Score = 105 bits (116), Expect = 8e-18 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 ||||| || ||||| || || || || |||| | || |||| | || || || || Sbjct 132456 TCAAAACGTCCTGGTCGCAGCAGAGCAGCATCCAAGACATCAGGTCTGTTGGTGGCAGCC 132397 Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 | |||| | || || | ||||| |||||||| ||||||| || ||||| || Sbjct 132396 AGCACAATGACTCCAGTGTTGCCCTCAAAGCCATCCATTTCTGTCAGCAGCTGGTTGATG 132337 Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGG 9704 || || || || |||||||| || || ||| ||||||| || || | ||||| | Sbjct 132336 GTCTGCTCACGCTCATCATT-GCCACCAC-CCATGCCAGCACCACGCTGTCTGCCCACAG 132279 Query 9705 CATCAATCTCATCAATGAAGACGATGCATGG 9735 ||||||||||||||||||||||||||||||| Sbjct 132278 CATCAATCTCATCAATGAAGACGATGCATGG 132248 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 9755 TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 9814 ||||| ||||||| ||||| ||| |||||||| || |||| ||||||||| | || | Sbjct 131677 TCAAACAGATCCCTGACACGGGAGGCACCCACACCCACGAACAGCTCCACAAACTCTGAG 131618 Query 9815 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9874 || | ||| || |||||| || || || || |||||||| ||| || || ||| Sbjct 131617 GCTGCACAGCTGAAGAAGGGCACGCCAGCCTCGCCAGCAATGGCCTTGGCCAGCAGGGTC 131558 Query 9875 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 || || || ||||| ||| | ||||| ||| ||||||||||| || Sbjct 131557 TTGCCTGTGCCTGGGGGGCCCACCAGGAGACACCCTTTGGGAATCTTGGCACC 131505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583255864155480