Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq33 165 2e-35 seq13 134 4e-26 seq264 131 5e-25 seq48 93.3 1e-13 seq155 84.2 7e-11 seq47 84.2 7e-11 >seq33 Length=490745 Score = 165 bits (182), Expect = 2e-35 Identities = 180/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 140499 ATATTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATA 140558 ||| | |||| |||||||| | | ||||| || || || || ||||| || || || Sbjct 197545 ATAATCTACAAGCCACCACGCAGACGAAGAACCAGGTGGAGGGTGGACTCCTTCTGGATG 197486 Query 140559 TTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGC 140618 || ||||||| || || || ||||| ||||| || || ||||||||||| ||||| ||| Sbjct 197485 TTGTAATCAGCCAAAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGC 197426 Query 140619 TGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCA 140678 || ||||||||||| || || || |||||||| || | || ||||| ||||| | || Sbjct 197425 TGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCT 197366 Query 140679 GATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| || || || ||||| | |||||| || || || || || ||||| |||||||| Sbjct 197365 GATGACTCCACCTCCAGTGTGATTGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 197307 Score = 140 bits (154), Expect = 1e-27 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | | || || ||||| || || || || || ||||| || | Sbjct 196177 TTTGCATGCCACCACGCAGACGCAGCACCAGATGGAGGGTGGATTCCTTCTGAATGTTGT 196118 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | || || || ||||| ||||| || || ||||||||||| | || ||||| | Sbjct 196117 AGTCTGCCAAAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGT 196058 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||||||||| || || || |||||||| || | ||| ||||| ||||| | || |||| Sbjct 196057 CAGGAGGAATACCCTCCTTGTCCTGAATCTTGGATTTGACATTGTCAATGGTGTCTGATG 195998 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| | || | ||||| || || || || || ||||| || ||||| Sbjct 195997 ACTCCACTTCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 195943 >seq13 Length=690608 Score = 134 bits (148), Expect = 4e-26 Identities = 467/717 (65%), Gaps = 14/717 (2%) Strand=Plus/Plus Query 349609 TGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGC 349668 ||| ||| |||| || ||||| || || || ||| | |||||| || ||||| || | Sbjct 513092 TGCAGTTGTTACAGTGCCAGCTTACTTCAACGATTCGCAGCGTCAGGCCACAAAGGACTC 513151 Query 349669 TGGCAG-CATTGCGGGGTTAAATGTTC-TAAGAATGATTAATGAACCCACTGCTGCAGCA 349726 | ||| ||| || || || | || | | | || || || || || ||||||||||| Sbjct 513152 AG-CAGTCATCGCTGGCTTGGA-GTGCATGCGTATCATCAACGAGCCAACTGCTGCAGCC 513209 Query 349727 ATTGCATATGGGCTTGATAAAATG-----AGT-GACCAAGaaaaaaaTATTCTTATTTTT 349780 || || ||||| || ||||| | | || | | || ||| |||| || ||| Sbjct 513210 ATCGCTTATGGTCTCGATAAGAAGGACACAGCCGTCGGCGAGCGCAATGTTCTGATCTTT 513269 Query 349781 GATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAA 349840 || | |||||||| || || ||||| || | || || | || ||||| ||||| || Sbjct 513270 GACCTTGGTGGTGGCACCTTCGATGTGTCGTTGCTGACCATCGAGGAGGGCATTTTCGAG 513329 Query 349841 GTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTT 349900 || || | || |||||||| || || | ||||| || || || || || | || || Sbjct 513330 GTCAAGTCCACAGCTGGTGACACTCACTTGGGTGGTGAGGACTTCGACAACAGGCTGGTC 513389 Query 349901 TCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAA-ATTGATATTGGAGATAATCCTAG 349959 ||||| | | || |||||||| |||| || | || || | || ||| | Sbjct 513390 AACCATTTCACTCAGGAGTTTAAGCG-CAAGAACAAGAAGGACATCACTGGCAACCCTCG 513448 Query 349960 AGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTAC 350019 || |||| | || | || | || || ||||| |||||| | | || || | | Sbjct 513449 TGCTCTGCGAAGGCTCCGGACGTCATGCGAGCGTGCAAAGCGTACTCTGTCCTCCAGCGC 513508 Query 350020 CCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTT-CATCTATTA 350078 || || || || || || || ||||| || || || |||| || | |||| Sbjct 513509 ACAGACGTCCATCGAGATCGACTCTCTCTTCGAAGGTGTCGACTTCTACAGCAGC-ATTA 513567 Query 350079 CACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGG 350138 | | || | || || || || ||||| || || ||| ||||| ||||| | Sbjct 513568 CCAGGGCCAGATTCGAGGAGTTGAACATGGACCTGTTCAGAAAGTGCATGGAGCCTGTCG 513627 Query 350139 AAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTG 350198 | || || |||||| |||||| ||| | | |||| || || |||||| Sbjct 513628 AGAAGTGCTTGCGAGATGCCAAAATGGACAAGAGCACTGTCCATGAGGTTGTCCTAGTTG 513687 Query 350199 GTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAG 350258 |||| || || |||||||| || || || ||| | || || || || |||||||| | Sbjct 513688 GTGGCTCCACCCGTATTCCTAAGGTGCAGCAGATGCTTCAGGACTTCTTCAATGGCAAGG 513747 Query 350259 AACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGG 350315 | | | | ||| || || |||||||| || || ||||||||||||||||| |||| Sbjct 513748 AGCTATGCAAATCTATCAACCCAGATGAGGCAGTAGCATATGGTGCTGCTGTGCAGG 513804 >seq264 Length=364395 Score = 131 bits (144), Expect = 5e-25 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | | || || |||||||| || ||||| || || || || | Sbjct 31801 TTTGCATGCCACCACGCAGACGCAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGT 31742 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | |||| || || || ||||| || | || || ||||||||||| ||||| ||||| | Sbjct 31741 AGTCAGCCAAGGTGCGGCCATCCTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGT 31682 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||| || || || || |||||||| || | || ||||| || || | || || | Sbjct 31681 CAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAG 31622 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | || | ||||| ||||| | || || ||||| || ||||| Sbjct 31621 ACTCAACCTCCAAAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATTTGCAT 31567 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | | ||||| ||||| || || || || ||||| || || |||| Sbjct 32665 CCACCACGCAGACGCAACACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCC 32606 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || ||||| || || ||||| ||||||||||| ||||| ||||| |||||||| Sbjct 32605 AGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGG 32546 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || |||||||| |||| || ||||| ||||| | || || | || || Sbjct 32545 ATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCGACC 32486 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || | || | ||||| || || | || || ||||| || ||||| Sbjct 32485 TCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 32439 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | | || || | ||||||||||||||| || || || || | Sbjct 32445 TTTGCATGCCACCACGCAGACGAAGGACCAAATGAAGAGTAGACTCCTTCTGGATGTTGT 32386 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | |||| || || || ||||| || || || || ||||||||||| ||||| ||||| | Sbjct 32385 AGTCAGCCAAGGTACGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGT 32326 Query 140623 CAGGAGGAATTCCT 140636 ||||||| || ||| Sbjct 32325 CAGGAGGGATGCCT 32312 >seq48 Length=276317 Score = 93.3 bits (102), Expect = 1e-13 Identities = 190/280 (68%), Gaps = 3/280 (1%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||||||| | || || ||||| || || ||||| || ||||| || || ||||| | Sbjct 122482 ATGCTGTTGTCACCGTCCCAGCATACTTCAATGACGCTCAGCGACAAGCCACCAAAGACG 122423 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| |||||| || | | || | || || ||||| || || || ||||| | Sbjct 122422 CTGGTGTCATTGCTGGTCTCACAGTGGAGCGTATTATCAATGAGCCAACAGCAGCAGCCA 122363 Query 349728 TTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAG 349787 |||| || || ||||| || | | ||| | | | | || || || | ||| || || | Sbjct 122362 TTGCCTACGGTCTTGACAAGAAGGGTGGCGA-GCACAACATCTTGGTGTTT--GACTTGG 122306 Query 349788 GTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAG 349847 |||||||||| |||||||| || | || || |||| | || | ||||| || Sbjct 122305 GTGGTGGTACCTTTGATGTGTCCATCCTGACCATTGACAACGGCGTGTTTGAGGTCGTGT 122246 Query 349848 CAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 | || ||||| || || || | || || ||||| ||||| Sbjct 122245 CCACAGCTGGAGACACCCACTTGGGCGGTGAAGACTTTGA 122206 >seq155 Length=405166 Score = 84.2 bits (92), Expect = 7e-11 Identities = 141/203 (69%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 |||||| | || || ||||| || || || || | ||| | || || || |||||| Sbjct 64176 GCTGTTGTGACAGTGCCAGCTTACTTCAACGACTCTCAGAGGCAGGCTACCAAGGATGCT 64117 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 ||| ||||||| || || |||| || |||| || || || |||||||| || || | Sbjct 64116 GGCCGCATTGCTGGCTTGGATGTGCTGCGAATCATCAACGAGCCCACTGCAGCCTCATTG 64057 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 ||||| || |||| || | ||| ||| | | || || | ||||| || ||| Sbjct 64056 GCATACGGCTTTGAGAAGAAGAG----CAATGAGACCATC--CTGGTGTTTGACTTGGGT 64003 Query 349790 GGTGGTACTTTTGATGTATCACT 349812 |||||||| ||||| || ||||| Sbjct 64002 GGTGGTACCTTTGACGTGTCACT 63980 >seq47 Length=350483 Score = 84.2 bits (92), Expect = 7e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 |||||||| | || || || || ||||| || || || | || || | ||||| || Sbjct 106378 ACAAGATGTAAGGTTGATTCCTTCTGAATGTTGTAGTCTGCCAAAGTCCTGCCATCCTCC 106437 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTG 140647 | || || ||||||||||| || || ||||||||||| ||||| |||||||| ||||| Sbjct 106438 AACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCCTG 106496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515241256588631