Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq264 197 2e-45 seq33 194 2e-44 >seq264 Length=364395 Score = 197 bits (218), Expect = 2e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| | ||||||||||| || ||| | ||||||||||| Sbjct 31567 ATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTTTGGAGGTTGAGTCTTCA 31626 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || ||||||||||||||||| || ||||| |||||| Sbjct 31627 GACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAG 31686 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| | ||||||| || ||| | || ||||| || Sbjct 31687 CAGCGTCTGATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGCACCTTGGCTGACTACAAC 31746 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| |||||||| || ||||||| || ||||| Sbjct 31747 ATCCAGAAGGAGTCCACCCTTCATCTGGTGCTGCGTCTGCGTGGTGG 31793 Score = 197 bits (218), Expect = 2e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| | || |||||||| || ||| | ||||| ||||| Sbjct 32439 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACCATCACTTTGGAGGTCGAGTCTTCA 32498 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||| |||| ||||||||||||||||| || ||||| |||||| Sbjct 32499 GACACCATTGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAG 32558 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| || || || ||||||| || || || || ||||| || Sbjct 32559 CAGCGTCTGATCTTTGCTGGCAAACAGCTGGAGGATGGACGCACTCTGGCTGACTACAAC 32618 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||||||||| ||||| || || |||||||| || ||||| Sbjct 32619 ATTCAGAAGGAATCCACCCTTCACCTTGTGTTGCGTCTGCGTGGTGG 32665 Score = 118 bits (130), Expect = 1e-21 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || ||||| |||||||||||||| || |||||||| ||||| || ||||||| |||| Sbjct 32313 GGCATCCCTCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGT 32372 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||| | || ||||| || |||| ||||| || ||||||||| | ||| | ||||| || Sbjct 32373 ACCTTGGCTGACTACAACATCCAGAAGGAGTCTACTCTTCATTTGGTCCTTCGTCTGCGT 32432 Query 27628 GGTGG 27632 ||||| Sbjct 32433 GGTGG 32437 Score = 109 bits (120), Expect = 6e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || |||||||| |||||||||||||| || || || || ||||| |||||||| | ||| Sbjct 31104 GGTATTCCTCCTGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGC 31163 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || || ||||| || |||| ||||| ||||| || ||| | ||| ||||||| || Sbjct 31164 ACTCTTGCCGACTACAACATCCAGAAGGAGTCCACACTGCATTTGGTCCTGCGTCTGCGT 31223 Query 27628 GGTGG 27632 ||||| Sbjct 31224 GGTGG 31228 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || |||||||||||| | || |||||||| ||||| |||||||||| |||| Sbjct 31441 GGCATCCCACCTGACCAGCAGCGTTTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTCGT 31500 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || || ||||| || | || ||||| ||||| | ||||| ||| | ||||| || Sbjct 31501 ACTCTTGCTGACTACAACATTCAGAAGGAGTCCACATTGCATCTGGTCCTTCGTCTGCGT 31560 Query 27628 GGTGG 27632 ||||| Sbjct 31561 GGTGG 31565 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| |||||||||||||| || |||||||| || || | ||||| ||||| Sbjct 31795 ATGCAAATTTTTGTCAAGACGCTGACTGGCAAGACCATCACATTGGAGGTGGAGTCCTCA 31854 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 |||| ||||| ||| | ||| |||| |||||||||||||| || Sbjct 31855 GATACCATTGACAATGTCAAGTCTAAGATTCAGGACAAGGAAGG 31898 >seq33 Length=490745 Score = 194 bits (214), Expect = 2e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || || |||||||| || ||| | || || |||||| Sbjct 195943 ATGCAAATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTTTGGAAGTGGAGTCATCA 196002 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | || | || ||||||||||||||||| |||||||| |||||| Sbjct 196003 GACACCATTGACAATGTCAAATCCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAG 196062 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || |||||||| ||||| || ||||||| ||||| | |||||||| || Sbjct 196063 CAGCGGTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTTTGGCAGACTACAAC 196122 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||||||||| || ||||| || ||||||| || ||||| Sbjct 196123 ATTCAGAAGGAATCCACCCTCCATCTGGTGCTGCGTCTGCGTGGTGG 196169 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || || ||||| |||||| Sbjct 197307 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACAATCACACTGGAGGTGGAGTCATCA 197366 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||| | || ||||||||||||||||| |||||||| |||||| Sbjct 197367 GACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 197426 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| || ||||||| || || | || || || || Sbjct 197427 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTTTGGCTGATTACAAC 197486 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || | ||||| || ||||| Sbjct 197487 ATCCAGAAGGAGTCCACCCTCCACCTGGTTCTTCGTCTGCGTGGTGG 197533 Score = 109 bits (120), Expect = 6e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || |||||||||||| | ||||||||||| ||||| || ||||| | ||| Sbjct 195471 GGCATCCCACCTGACCAGCAGCGTTTGATTTTTGCTGGCAAGCAGCTTGAGGACGGACGT 195530 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || || ||||| || |||| ||||| ||||| || ||||| ||| |||| |||||| Sbjct 195531 ACACTTGCCGACTACAACATCCAGAAGGAGTCCACCCTCCATCTGGTCCTGCGACTTCGC 195590 Query 27628 GGTGG 27632 || || Sbjct 195591 GGAGG 195595 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || ||||| |||||||||||||| || |||||||| ||||| || ||||||| || Sbjct 196615 GGTATCCCTCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGC 196674 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || | |||||||| || |||| ||||| ||||| | ||| | || ||||||| || Sbjct 196675 ACTTTGGCAGACTACAACATCCAGAAGGAGTCCACATTGCATTTGGTGCTGCGTCTGCGT 196734 Query 27628 GGTGG 27632 || || Sbjct 196735 GGAGG 196739 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || ||||| |||||||||||||| || |||||||| ||||| || ||||||| ||| Sbjct 197181 GGTATCCCTCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGT 197240 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || || ||||| || |||| || || ||||| || || | || ||||||| || Sbjct 197241 ACTCTGGCTGACTACAACATCCAGAAAGAGTCCACCCTGCACTTGGTGCTGCGTCTGCGT 197300 Query 27628 GGTGG 27632 || || Sbjct 197301 GGAGG 197305 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || ||||| || |||||||||||||| || |||||||| ||||| || ||||||| || Sbjct 195817 GGCATTCCCCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGC 195876 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 || || || ||||| || | || ||||| ||||| || || | || |||||||| Sbjct 195877 ACTCTTGCTGACTACAACATTCAGAAGGAGTCCACACTCCACTTGGTGTTGCGTCT 195932 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||||||||| || || |||||||| || ||| | ||||| |||||| | Sbjct 196741 ATGCAAATATTTGTCAAGACTCTGACTGGCAAGACCATCACTTTGGAGGTGGAGTCATCT 196800 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||||| ||| | ||| | || || |||||||||||||| Sbjct 196801 GACACCATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGG 196844 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || || ||||| ||||| || | ||||| |||||| Sbjct 196171 ATGCAAATCTTTGTCAAGACCCTCACTGGCAAAACTATCACGTTGGAGGTGGAGTCATCA 196230 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||||| ||| ||||| | || || ||||| |||||||| Sbjct 196231 GACACCATTGACAATGTGAAGTCCAAGATCCAGGATAAGGAGGG 196274 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || |||||||| || ||||| ||||||||||| Sbjct 195241 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAGTCCTCA 195300 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | |||| ||| ||||| | || |||||||||||||| || Sbjct 195301 GACACTATTGACAATGTGAAGTCCAAGATTCAGGACAAGGAAGG 195344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570305573748240