Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq33 102 5e-17 seq264 84.2 1e-11 >seq33 Length=490745 Score = 102 bits (112), Expect = 5e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| |||||| ||| ||||| |||||||| || |||| | || || Sbjct 196160 AGACGCAGCACCAGATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAAAGTACGG 196101 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || || ||||| || || ||||| ||||| || || | |||||| Sbjct 196100 CCATCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCAGGAGGAATACCCTCC 196041 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || | ||| || | ||| |||||| ||||||||||| || Sbjct 196040 TTGTC-CTGAATCTTGGATTTGACATTGTCAATGGTGTCTGATGACTCCACTTCCAAAGT 195982 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || || ||||| || |||||| Sbjct 195981 GATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCATG 195942 Score = 95.1 bits (104), Expect = 8e-15 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| |||||||||||||| ||||| ||| |||||| |||||||| || || | Sbjct 195942 GCCTCCTCTCAGACGCAACACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCAGC 195883 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | || ||||| || || || ||||| || | |||||| ||||| || || Sbjct 195882 AAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGG 195823 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG--AAAGTGTTC 34546 ||||| | |||| ||||| ||| |||||| || ||||| ||||| | |||||| | Sbjct 197524 AGACGAAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAAGTG--C 197467 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 | | || ||||| || || || ||||| || | |||||| ||||| || || | |||| Sbjct 197466 GGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCT 197407 Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACG 34665 ||||||| ||| || | || || | ||| |||||| |||||| |||| Sbjct 197406 CCTTGTC-CTGAATCTTGGACTTGACATTGTCAATGGTGTCTGATGACTCCACCTCCAGT 197348 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || || | || || ||||| ||||||||| Sbjct 197347 GTGATTGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATG 197306 >seq264 Length=364395 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||||||| | || || ||| ||||| |||||||| || || | || || || Sbjct 32656 AGACGCAACACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAGAGTGCGT 32597 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || ||||| || ||||| || | |||||| ||||| || || | |||||| Sbjct 32596 CCATCCTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCC 32537 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || | || || | ||| |||||| ||| || |||| || Sbjct 32536 TTGTC-CTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGT 32478 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || || || || ||||| || |||||| Sbjct 32477 GATGGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCATG 32438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727003185741