Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq26 690 0.0 >seq26 Length=15232 Score = 690 bits (764), Expect = 0.0 Identities = 751/988 (76%), Gaps = 8/988 (1%) Strand=Plus/Plus Query 176113 TTTTGCCAGTGGGTCACCAATACAAACAACAGAATTTACGTTGGTTGGTTTGGTGTGCTC 176172 ||||| ||||||| || || | ||| | || ||| |||||||||||||||| | Sbjct 1237 TTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTTGGTGTTTTA 1296 Query 176173 ATGATTCCATGTCTGCTCACTGCTGCAGCATGT-TTTATCGTTGCATTTATTGCAGCACC 176231 ||||| || ||| | ||||| || | ||| ||||| |||||||| | ||||| || Sbjct 1297 ATGATCCCTACTCTTTTAACTGCAACAAC-TGTGTTTATTATTGCATTTGTAGCAGCTCC 1355 Query 176232 ACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAA 176291 ||||| || |||||||||||||| || ||||| | || || || | || |||||||| Sbjct 1356 TCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTACGGAAACAA 1415 Query 176292 CATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAAT 176351 ||| ||||| || || || || || | ||||| ||||| || |||||||||||||||| Sbjct 1416 CATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTTCTACCCAAT 1475 Query 176352 CTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGT 176411 |||||||||||| | | || || ||| | ||||| || || || |||||| | ||||| Sbjct 1476 CTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGT 1535 Query 176412 ATTCCAC--TTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTTAGTTAC 176469 || |||| || |||| |||| | || |||||||| || ||||||| ||| || | Sbjct 1536 ATGCCACTTTTTCTTAGGTGTATGT-TGC-TACATGGGGCGTGAATGGGAGCTTTCTTTC 1593 Query 176470 AGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATG 176529 | |||| ||||| |||||||| ||| || |||||||||||||| | || || | Sbjct 1594 CGTTTAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 1653 Query 176530 GCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGC 176589 || || ||| | |||| || |||||||||| ||||| ||| |||||||| | || Sbjct 1654 GCTGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCCCTTAGGT 1713 Query 176590 ATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCAC 176649 || |||||||| || ||||||||| ||||||||||||| ||||||||||| |||||||| Sbjct 1714 ATCTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTTAATGCAC 1773 Query 176650 CCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCAC 176709 || ||||| ||| | || || |||||||| |||||||| ||||||||||| || ||||| Sbjct 1774 CCTTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGCTATGCAT 1833 Query 176710 GGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTAC 176769 || | || ||||| ||| | | | || ||||| || ||| |||| ||| | Sbjct 1834 GGTTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGCTAACGAA 1893 Query 176770 GGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTT 176829 |||||||||||||| ||||||||||| || ||||||||||| ||||| |||||||||||| Sbjct 1894 GGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGGTTACTTT 1953 Query 176830 GGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTT 176889 || ||| | || ||||| || ||||||||||| |||||| | | | ||||||||| | Sbjct 1954 GGGCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTTCTTCTTA 2013 Query 176890 GCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTC 176949 || |||| ||||| || | |||||||||||||| | ||| | | || |||||||| Sbjct 2014 GCTGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTATGGCATTT 2073 Query 176950 AACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTC-TGGTAAAGTGATTCC 177008 ||||| |||||||||||||| ||||| || || ||||| ||| ||| || ||| Sbjct 2074 AACCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGAC-TCTCAAGGTCGTGTAATTAA 2132 Query 177009 TACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAA 177068 ||||||| || || | |||||||| ||||| |||||||| || |||||||| ||||| Sbjct 2133 CACATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGAACGTAA 2192 Query 177069 TGCTCACAACTTCCCACTTGACCTTGCT 177096 ||||||||||||||||||||| | ||| Sbjct 2193 CGCTCACAACTTCCCACTTGACTTAGCT 2220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603489292928640