Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq33 158 3e-33 seq264 152 1e-31 seq522 104 5e-17 seq118 86.0 1e-11 >seq33 Length=490745 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| ||||| || | || | ||||| Sbjct 197518 AGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAAGTGCGGCCATCC 197459 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || || || ||||||||||||| || ||||||||| Sbjct 197458 TCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 197399 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || || |||||||| || || ||||| || ||||| ||| Sbjct 197398 TGAATCTTGGACTTGACATTGTCAATGGTGTCTGATGACTCCACCTCCAGTGTGATTGTC 197339 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 197338 TTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 197307 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || ||||| || || || ||||| || || || | || | ||||| Sbjct 196154 AGCACCAGATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAAAGTACGGCCATCC 196095 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| | || || ||||||||||||| || ||||||||| Sbjct 196094 TCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCC 196035 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||| || || || |||||||| || || || || | |||||| ||| Sbjct 196034 TGAATCTTGGATTTGACATTGTCAATGGTGTCTGATGACTCCACTTCCAAAGTGATGGTC 195975 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| ||||| | ||||| Sbjct 195974 TTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 195943 Score = 89.7 bits (98), Expect = 1e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || | ||| || ||||||||||| |||||||| || || || || Sbjct 197303 TCCACGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCCAG 197244 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 || | ||||| || ||||||||||| || ||||| || || || ||||||||||| Sbjct 197243 AGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 197187 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| ||||| || || || |||||||| || |||||||| || || ||||| || Sbjct 195589 CGAAGTCGCAGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTA 195530 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 | ||| || || ||||||||||| || || || | || || |||||||| || Sbjct 195529 CGTCCGTCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCAGGTGG 195477 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||||||||| ||||| || ||||| |||||||||||||| || ||||| Sbjct 195700 CCTTCCTTGTCCTGAATCTTGCTCTTAACGTTGTCGATGGTGTCAGATGACTCCACCTCC 195641 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || || ||||| || || | |||||| Sbjct 195640 AGGGTGATAGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 195597 >seq264 Length=364395 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || ||||| |||||||| || |||||||| || || || | ||| | ||||| Sbjct 31778 AGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCATCC 31719 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| || ||||| || || || ||||||||||| | || ||||||||| Sbjct 31718 TCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 31659 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||||||||| || |||||||| | |||||| ||| Sbjct 31658 TGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCAACCTCCAAAGTGATGGTC 31599 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| ||||| | ||||| Sbjct 31598 TTGCCGGTCAAGGTCTTGACAAAGATTTGCAT 31567 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||||||||| ||||| || || || ||||| || || || || || | |||||| ||| Sbjct 32647 ACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAGAGTGCGTCCATCCTCC 32588 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 ||||| ||||| || ||||| || || || ||||||||||| | || ||||||||||| Sbjct 32587 AGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGA 32528 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| || || || || |||||||| || || ||||| | |||||| ||||| Sbjct 32527 ATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGTCTTG 32468 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || | ||||| ||||| | ||||| Sbjct 32467 CCAGTCAAGGTCTTGACAAAGATTTGCAT 32439 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || || |||||||| || |||||||| || || ||||| || | || || Sbjct 31213 AGGACCAAATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGACCGTCC 31154 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 || ||||||||||| |||||||| || || || ||||||||||||| Sbjct 31153 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGAA 31108 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||||| ||||| || |||||||| || || || | ||| | ||||| Sbjct 32422 AGGACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTACGACCATCC 32363 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 |||||||||||||| || ||||| || || || ||||||||||| Sbjct 32362 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 32319 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||||||||| || |||||| |||||||| ||||||||||| || || ||||| Sbjct 31333 CCTTCCTTGTCTTGAATCTTTGACTTCACGTTGTCGATGGTGTCTGAAGACTCCACCTCC 31274 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | |||||||||||| || || | ||||| ||||| | ||||| Sbjct 31273 AAAGTGATCGTCTTGCCGGTCAAGGTCTTGACAAAGATTTGCAT 31230 >seq522 Length=63498 Score = 104 bits (114), Expect = 5e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 139810 CCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAA 139869 |||||||||||||| |||||||| || || || || ||||||| | || |||| |||| Sbjct 11911 CCAAAGAAGCACGGCAGAGGAGGGCAGTCAGCCCTTCGTTTTGCGCGGCTGCGAATGGAA 11852 Query 139870 AAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAAGAC 139929 ||| | |||||||| | |||| |||||||||| || | |||| ||| || || Sbjct 11851 AAGCGACACAACTATGTACGAAAGGTTGCAGAGACAGCTGTGCAGTTTTTCATATCAGGG 11792 Query 139930 AACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTC 139989 ||||| ||| | || |||||| | || ||||| || || ||||| || ||||| Sbjct 11791 GACAAGGTCAATGTGGCCGGCATTGTTCTTGCTGGTTCAGCTGACTTCAAAACTGAGCTC 11732 Query 139990 CTGGAATCTGACTTTTTTGA 140009 |||| ||| | ||||| Sbjct 11731 AGTCAATCAGACATGTTTGA 11712 >seq118 Length=380107 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || |||||||| |||||||| ||| || || ||||||||||| || || ||||| Sbjct 348823 CCCTCCTTGTCTTGGATCTTGCTTTTGACATTGTCGATGGTGTCTGATGACTCGACCTCC 348882 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 | |||||| ||||| ||||| || ||||| ||||| | |||||| || Sbjct 348883 AAAGTGATGGTCTTGCCCGTAAGGGTCTTCACAAAGATCTGCATGTT 348929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159141945443105