Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq33 91.5 1e-13 seq264 86.0 5e-12 >seq33 Length=490745 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/102 (80%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| || ||| ||| || || || || || ||||||||||| ||| |||| ||| Sbjct 195577 ACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTACGTCCGTCCTCA 195518 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 ||||| ||||| ||||| || | |||||||||||| |||||| Sbjct 195517 AGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCAGGTGGG 195476 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||||||||| | || |||||||| || || ||| ||| || || || || || || Sbjct 195945 CATGCCTCCTCTCAGACGCAACACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTC 195886 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||||| || || | || |||||||| ||||| ||||| || |||||||||||||| | Sbjct 195885 AGCAAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGG 195826 Query 39174 GGG 39176 ||| Sbjct 195825 GGG 195823 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || || ||| ||| || || || || ||||| || | || || | || ||| Sbjct 197515 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAAGTGCGGCCATCCTCA 197456 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| || |||||||||||||| | || | || ||| |||||| Sbjct 197455 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 197396 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || |||| | | | || || |||||||| |||| ||||| | || Sbjct 197395 ATCTTGGACTTGACATTGTCAATGGTGTCTGATGACTCCACCTCCAGTGTGATTGTCTTG 197336 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || |||||||| ||||| Sbjct 197335 CCAGTCAGGGTCTTGACAAAGATCTGCAT 197307 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || ||| || || || || || || || || | || || | || || Sbjct 196152 CACCAGATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAAAGTACGGCCATCCTC 196093 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||| ||||| || | ||||||||||| | || | | ||| |||||| Sbjct 196092 AAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTG 196033 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || ||||| | | | || || |||||||| |||| ||||| | || Sbjct 196032 AATCTTGGATTTGACATTGTCAATGGTGTCTGATGACTCCACTTCCAAAGTGATGGTCTT 195973 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || |||||||||||||| Sbjct 195972 GCCAGTCAGAGTCTTGACAAAGATTTGCAT 195943 >seq264 Length=364395 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||| | || || ||| || || || || || || || || || || ||| | Sbjct 32653 CGCAACACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAGAGTGCGTCCA 32594 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||||||||| ||||| || |||||||||||||| | || | || ||| ||| Sbjct 32593 TCCTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTG 32534 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| || || |||| | | | || || ||||| || |||| ||||| Sbjct 32533 TCCTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATG 32474 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || || |||||||||||||| Sbjct 32473 GTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 32439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429542055846101