Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq142 205 2e-47 seq33 152 1e-31 seq264 140 8e-28 seq42 100 7e-16 seq105 93.3 1e-13 >seq142 Length=60166 Score = 205 bits (226), Expect = 2e-47 Identities = 218/288 (76%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 |||| | ||||||||||||| || |||||||||||| ||||||||| |||||||||||| Sbjct 25037 AACGCTCTATTTAATATTTGCTGCCTTTTCTGGTATCCTAGGTACTACATTTTCTATGAT 24978 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 ||| | ||||| |||| || ||| ||||| || || ||| ||||||||| Sbjct 24977 TATTCGTATAGAAGTAGCACAACCAGGTAACCAAATCTTAGCAGGAAATCACCAACTTTA 24918 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || || |||||||| || ||||| || | ||||| || ||| | || ||||| | ||| Sbjct 24917 TAATGTAATTATTACAGCCCATGCTTTATTGATGATCTTTTTTATGGTAATGCCTGCTAT 24858 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 ||| || ||||| ||||| || || |||||| | | || |||||||| || |||||||| Sbjct 24857 GATCGGGGGTTTTGGAAACTGGTTTGTTCCTATTTTAATAGGTGCTCCAGACATGGCTTT 24798 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 || | | |||||||| |||||||| ||| | ||||| || || || Sbjct 24797 CCCGCGTTTAAACAATATTAGTTTTTGGTTATTGCCGCCATCTTTGTT 24750 Score = 122 bits (134), Expect = 2e-22 Identities = 113/142 (80%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 7722 CTTATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACC 7781 ||||| || |||| ||||||| || | ||||| | || ||||||||||||| |||||| Sbjct 16982 CTTATGTCAAGGGCTGGTAAGGTTTTGCGCGTTGTGTCGAATTAAACCACATGTTCCACC 16923 Query 7782 GCTTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGT 7841 ||| | | | ||||| || ||||||||||||||||||||| |||| | |||||| Sbjct 16922 ACTTGTGTGAGCCCCCGTCTATTCCTTTGAGTTTTAACCTTGCGGCCGTACTCCTCAGGC 16863 Query 7842 GGAATATTT-ACGCGTTAGCTT 7862 |||| |||| |||||||||||| Sbjct 16862 GGAAGATTTAACGCGTTAGCTT 16841 Score = 104 bits (114), Expect = 6e-17 Identities = 72/82 (88%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 372624 GGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGT 372683 |||| ||||||||| |||| |||||||||||||||||||||||||||| || |||| || Sbjct 10872 GGTGGCACAGAATAGGGGGTGGCGACTGTTTACTAAAAACACAGGACTCTGCAAAGTGGT 10931 Query 372684 AAAACGATGTATAGGGTCTGAC 372705 || || | |||||||||||||| Sbjct 10932 AACACTAAGTATAGGGTCTGAC 10953 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 371377 TGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAGTTTATAGCGCCT 371436 ||||| | | ||| || | | ||| ||||| || ||||| |||||||||||||| ||| Sbjct 24543 TGCATTGTCATACCTGGGCCACGCATGTTAAAGATTGTAGTTATAAAGTTTATAGCTCCT 24602 Query 371437 AGAAGAGAAGATATACCTG-CAAGATGTAAACTAAATATTGCTAAATCGACGGAACCGCC 371495 | | | | |||||| | |||| ||||||||||| || |||||||| || ||||| || Sbjct 24603 AATATACTACTTATACCCGACAAG-TGTAAACTAAAAATAGCTAAATCCACAGAACCACC 24661 Query 371496 GGAGTG 371501 |||||| Sbjct 24662 GGAGTG 24667 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || || |||||||| |||||||| || ||||| ||||| |||||||| |||||||| || Sbjct 54119 AAGATCTGACCATCGGTAATAGATATTACATTGGTAGGAATATAAGCTGAAACATCTCCA 54060 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCA 4569 ||||||||||| | || || | ||||||| || ||| Sbjct 54059 GCTTGTGTTTCAATTACTGGGAGTGCTGTTAAAGAACCA 54021 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/100 (81%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCA-AGTCTTCTAAAAGGGCAG 6825 |||||| ||||||||||||| ||||||||| | |||||||| | ||| | | ||||| Sbjct 16236 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACGCTT-TCGAGCGGCAG 16294 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 ||||| |||| || |||||||||||| ||| ||||| || Sbjct 16295 CAGTGAGGAATTTTGGACAATGGGCGAGAGCCTGATCCAG 16334 >seq33 Length=490745 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || || ||||| |||||||| || || | ||||| || |||||||| Sbjct 196164 ACGCAGACGCAGCACCAGATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAAAGT 196105 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||| ||||| | || || ||||| || |||||||| Sbjct 196104 ACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCAGGAGGAATACC 196045 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| || ||| || ||||||||||| | ||||| || || Sbjct 196044 CTCCTTGTCCTGAATCTTGGATTTGACATTGTCAATGGTGTCTGATGACTCCACTTCCAA 195985 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| |||| ||| || | || | |||||| Sbjct 195984 AGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 195943 Score = 149 bits (164), Expect = 1e-30 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| ||||| || || |||| |||||||| |||||||| | ||||| Sbjct 197518 AGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAAGTGCGGCCATCC 197459 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || || || ||||| || ||||| || |||||||| Sbjct 197458 TCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 197399 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| || ||||||||||| | ||||| || | ||||| ||| Sbjct 197398 TGAATCTTGGACTTGACATTGTCAATGGTGTCTGATGACTCCACCTCCAGTGTGATTGTC 197339 Query 225682 TTGCCCGTCA 225691 ||||| |||| Sbjct 197338 TTGCCAGTCA 197329 >seq264 Length=364395 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || || || || ||||| || || |||| ||||| || ||||| || Sbjct 31788 ACGCAGACGCAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGT 31729 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || | |||||| ||||| ||||| || || || ||||| || || || || Sbjct 31728 GCGGCCATCCTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCC 31669 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| ||| ||| |||||||||||||| | || || || || Sbjct 31668 CTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCAACCTCCAA 31609 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| ||||| || || | || | |||||| Sbjct 31608 AGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATTTGCAT 31567 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || |||||||| || |||||||| || || | ||||| || |||| ||| Sbjct 32660 ACGCAGACGCAACACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAGAGT 32601 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || ||||| || ||||| ||||| || || || ||||| || || || || Sbjct 32600 GCGTCCATCCTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCC 32541 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| ||| ||| || ||||||||||| | || || || || Sbjct 32540 CTCCTTGTCCTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCCAA 32481 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| ||||| || || | || | |||||| Sbjct 32480 AGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 32439 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 225609 ACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTC 225668 ||||||||||||||| |||||| |||||| |||||||||||||| | ||||| || Sbjct 31334 ACCTTCCTTGTCTTGAATCTTTGACTTCACGTTGTCGATGGTGTCTGAAGACTCCACCTC 31275 Query 225669 TAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || |||||||||||||| ||||| || || | || | |||||| Sbjct 31274 CAAAGTGATCGTCTTGCCGGTCAAGGTCTTGACAAAGATTTGCAT 31230 >seq42 Length=3281 Score = 100 bits (110), Expect = 7e-16 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | | Sbjct 1896 TGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 1837 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| | || | | |||| || ||| || |||| Sbjct 1836 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCATACTCCCCAGGCGGGATACTTAACGC 1777 Query 7855 GTTAGCT 7861 ||||||| Sbjct 1776 GTTAGCT 1770 Score = 89.7 bits (98), Expect = 1e-12 Identities = 85/105 (81%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTA-AAAGGGCAG 6825 |||||| ||||||||||||| ||||||||| | ||||||| || |||||| | ||||| Sbjct 1005 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCC-AGACTTCTACGGAAGGCAG 1063 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATG 6870 ||||| |||| || |||||||||||||| ||| ||| |||| Sbjct 1064 CAGTGAGGAATCTTCCGCAATGGGCGAAAGCCTGACGGAGCAATG 1108 >seq105 Length=21348 Score = 93.3 bits (102), Expect = 1e-13 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||||||||| ||||| || |||||||| || || || || ||||||||||| ||| Sbjct 12349 AAGATTTGACCATCTGTAATTGAAATAACATTAGTTGGAATGTATGCAGAAACATCTCCT 12290 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAAT 4579 |||| ||||| |||| |||||| || || | |||||| || |||| Sbjct 12289 TCTTGAGTTTCTACAATAGGTAAAGCAGTCATGCTTCCACCTCCTAAAT 12241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192520855909838