Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq26 778 0.0 seq7 513 2e-140 >seq26 Length=15232 Score = 778 bits (862), Expect = 0.0 Identities = 782/1013 (77%), Gaps = 7/1013 (1%) Strand=Plus/Plus Query 183168 ACAACGCAATACTTCTGCCTGGGAATCCTTCTGCGAATGGATTACCAGCACTAACAACCG 183227 ||||| ||| |||| |||| | ||| || || ||| | || ||| | ||||| Sbjct 1214 ACAACCCAACACTT-----TGGGCACGCTTTTGTGAGTGGGTAACTTCAACTGAAAACCG 1268 Query 183228 CCTCTATGTGGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACCATCTG 183287 |||| | ||||||||||| | ||||| || ||||| || | |||| || ||| Sbjct 1269 TATCTACATTGGTTGGTTTGGTGTTTTAATGATCCCTACTCTTTTAACTGCAA-CAACTG 1327 Query 183288 -CTTCATCGTTGCCTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCCG 183346 || || |||| || || || ||||||||||||||||||||||| || || || || | Sbjct 1328 TGTTTATTATTGCATTTGTAGCAGCTCCTCCTGTGGACATCGACGGTATTCGTGAGCCAG 1387 Query 183347 TTGCTGGGTCGCTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCA 183406 | |||| || || |||| ||||||||||| ||||||||||| ||||||||| |||| | Sbjct 1388 TGTCTGGTTCCCTGTTGTACGGAAACAACATTATCTCTGGTGCTGTTGTTCCTACTTCAA 1447 Query 183407 ACGCAATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGT 183466 | |||||||| | |||||||| || |||||||||||||| || | ||||||||| | | Sbjct 1448 ATGCAATTGGTTTACACTTCTACCCAATCTGGGAAGCAGCTTCTTTAGATGAGTGGTTAT 1507 Query 183467 ATAACGGTGGTCCTTACCAACTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACA 183526 | |||||||||||||||||| | || || | |||||| || | || || | ||||||| Sbjct 1508 ACAACGGTGGTCCTTACCAATTAGTTGTATGCCACTTTTTCTTAGGTGTATGTTGCTACA 1567 Query 183527 TGGGTCGTGAGTGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTT 183586 |||| ||||| ||||| | |||| |||| | |||||||| |||||||| ||| |||| Sbjct 1568 TGGGGCGTGAATGGGAGCTTTCTTTCCGTTTAGGTATGCGCCCTTGGATTGCTGTAGCTT 1627 Query 183587 ATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTT 183646 | ||||| ||||| ||||| || ||||| ||| | |||| ||| |||||||||| | Sbjct 1628 ACTCTGCACCAGTTGCAGCTGCTACTGCTGTGTTCATTATCTACCCTATCGGTCAAGGGT 1687 Query 183647 CTTTTAGTGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCC 183706 |||||||||| ||||||||| | |||||| || || ||||||| |||| |||| |||| Sbjct 1688 CTTTTAGTGACGGTATGCCCTTAGGTATCTCAGGTACTTTTAACTTTATGATTGTATTCC 1747 Query 183707 AAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCG 183766 |||| |||||||||||| | |||||||| ||||||||| | ||||| || ||||| || | Sbjct 1748 AAGCTGAGCACAACATCTTAATGCACCCTTTCCACATGTTAGGTGTTGCAGGTGTATTTG 1807 Query 183767 GTGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAA 183826 |||||||||| ||| ||| ||||| ||||| | || ||||| || | | ||||||| Sbjct 1808 GTGGTTCTCTTTTCTCTGCTATGCATGGTTCATTAGTAACTTCATCATTAATCCGTGAAA 1867 Query 183827 CCACTGAGTCTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACA 183886 | |||||| | || ||| | |||||||| ||||||||||||||||| || |||| Sbjct 1868 CAACTGAGAACCAATCTGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACA 1927 Query 183887 ACATTGTCGCTGCTCATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACA 183946 ||||||| ||||| || || |||||||| ||| |||| ||||| || ||||| || |||| Sbjct 1928 ACATTGTTGCTGCGCACGGTTACTTTGGGCGTTTGATTTTCCAATACGCTTCTTTCAACA 1987 Query 183947 ATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTG 184006 | || |||||| | ||||||||| | ||||| |||||||| || || ||||||||||||| Sbjct 1988 ACTCACGTTCTTTACACTTCTTCTTAGCTGCATGGCCAGTAGTAGGGATCTGGTTTACTG 2047 Query 184007 CTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCA 184066 || | ||| | ||||||||||||||||| || ||||| ||||| ||||| || | Sbjct 2048 CTTTAGGTATATCAACTATGGCATTTAACCTAAACGGTTTCAACTTTAACCAATCAGTTG 2107 Query 184067 TTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTG 184126 | || |||||||||||| | ||||| ||||| ||| || ||||||||||| || | Sbjct 2108 TAGACTCTCAAGGTCGTGTAATTAACACATGGGCTGACATTATCAACCGTGCTAACCTAG 2167 Query 184127 GCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCT 184179 | ||||| || |||||||| ||||| |||||||||||||| || ||| | ||| Sbjct 2168 GTATGGAGGTAATGCACGAACGTAACGCTCACAACTTCCCACTTGACTTAGCT 2220 >seq7 Length=22195 Score = 513 bits (568), Expect = 2e-140 Identities = 725/1019 (71%), Gaps = 0/1019 (0%) Strand=Plus/Plus Query 185955 GGATGGTTCGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGG 186014 || ||||| ||| | ||||| ||| | |||||||| ||||| ||||| || ||| Sbjct 4105 GGTTGGTTTGATACAGTAGATGATTGGGTACGCCGCGACCGTTTTGTTTTTGTAGGTTGG 4164 Query 186015 TCTGGATTACTTCTTTTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACA 186074 || || ||| | || ||||| || || ||| | || | ||||| ||| | ||||| | Sbjct 4165 TCAGGTTTATTACTCTTTCCTACAGCATATCTTGCTTTAGGTGGATGGTTAACTGGGATT 4224 Query 186075 ACGTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAAT 186134 || ||||| || |||||||| ||||| || || || || ||| || ||| |||| Sbjct 4225 ACTTTTGTAACTTCTTGGTATACTCACGGTTTAGCAACTAGTTTCCTAGAAGGTTGTAAT 4284 Query 186135 TTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTT 186194 || | || || ||||| |||||||| || || ||||||||||||| | | | ||| Sbjct 4285 TTCTTAACTGCTGCAGTTTCAACTCCAGCAAACAGTATGGGTCATTCTTTATTGTTTCTT 4344 Query 186195 TGGGGTCCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAAT 186254 ||||| || || ||||| ||| | | || ||||| ||| | || || || ||| Sbjct 4345 TGGGGACCAGAAGCTCAATCTGATTTTACTCGTTGGTTTCAATTAGGCGGGCTTTGGGCA 4404 Query 186255 TTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATC 186314 ||||| || || || ||||| |||||| | || ||||| ||| | || || |||||||| Sbjct 4405 TTTGTAGCTCTTCATGGAGCTTTTGCTTTAATTGGTTTTATGTTACGCCAATTTGAAATT 4464 Query 186315 AGTCGTCTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTC 186374 |||| ||| | | ||||| |||||||| ||||| ||||| | ||||| ||||| Sbjct 4465 GCTCGTTCAGTAAGACTTCGTCCTTACAATGCTATTGCGTTTTCAGCACCTATTGCTGTT 4524 Query 186375 TTTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCC 186434 |||||| ||| || | || ||||| | || ||||| ||||| || ||||| Sbjct 4525 TTTGTTTCTGTTTTTTTAATTTACCCGTTAGGTCAGTCTGGTTGGTTTTTTGCTCCTAGT 4584 Query 186435 TTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACG 186494 ||||| | || |||||||| ||||| | | || |||||||||||||||||||||| Sbjct 4585 TTTGGTATTGCTTCAATCTTTCGATTCATTCTTTTTTTCCAAGGATTCCACAACTGGACT 4644 Query 186495 TTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCA 186554 || || || |||||||||||||| ||||| ||| | | |||| |||| |||| | || Sbjct 4645 TTAAACCCTTTCCACATGATGGGAGTAGCTGGTGTATTAGGTGCTGCTTTGCTTTGTGCG 4704 Query 186555 ATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTC 186614 || || |||| ||||| ||||| ||||||| ||||||||| || |||||||| ||| Sbjct 4705 ATTCACGGTGCAACTGTTGAAAACACTCTTTTTGAAGATGGTGATGGTGCAAACACTTTC 4764 Query 186615 AAAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTC 186674 ||||| | | || |||| ||||||||| || || | || || || || | ||| Sbjct 4765 CGTGCATTTAACCCAACTCAAGCAGAAGAAACGTACTCTTTCGTGACAGCTAATCGTTTC 4824 Query 186675 TGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTC 186734 ||||| || ||||| || | || ||| || || || |||||||| || || ||| | Sbjct 4825 TGGTCTCAAATCTTTGGTGTAGCTTTTTCAAACAAACGATGGCTTCACTTTTTTATGTTA 4884 Query 186735 TTTGTTCCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAAC 186794 ||||| || || | ||| | |||| | | |||| || | ||| | || | || Sbjct 4885 TTTGTGCCAGTAACTGGTTTATGGATGAGTGCACTTGGTGTTGTAGGTTTAGCATTAAAT 4944 Query 186795 CTTCGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAG 186854 || || ||||| || || ||| ||| || | | |||||||| |||||||| || ||| Sbjct 4945 CTACGAGCTTACGATTTCGTATCTCAAGAAATTCGTGCAGCAGAAGATCCTGAATTTGAG 5004 Query 186855 ACGTTCTATACCAAGAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTG 186914 || || || || || || || || || || |||||| | ||||| |||||||| | Sbjct 5005 ACTTTTTACACAAAAAACATTCTTTTAAACGAAGGTATTCGTGCATGGATGGCTGCTCAA 5064 Query 186915 GATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 ||||| ||||||||||| ||||||| ||||| || || || ||| | || |||||||| Sbjct 5065 GATCAGCCACATGAAAAAATTGTATTCCCTGAGGAGGTATTACCACGTGGAAACGCTCT 5123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622065135729240