Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq26 724 0.0 seq7 549 2e-151 seq262 102 9e-17 >seq26 Length=15232 Score = 724 bits (802), Expect = 0.0 Identities = 763/997 (77%), Gaps = 8/997 (1%) Strand=Plus/Plus Query 163919 TGGGAACAATTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTC 163978 |||| || || ||| | |||||||||||||| || || ||| | || | |||||||| Sbjct 1228 TGGGCACGCTTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTT 1287 Query 163979 GGCGTCCTGATGATTCCCTGC-CTGCTGGCAGCGACTACA-TGTTTCATCATCGCCTTCA 164036 || || | ||||| |||| | || | | || || || ||||| || || || || Sbjct 1288 GGTGTTTTAATGAT-CCCTACTCTTTTAACTGCAACAACTGTGTTT-ATTATTGCATTTG 1345 Query 164037 TCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGT 164096 | | |||||||||||||||||||| || || || || || || ||||||| || ||| Sbjct 1346 TAGCAGCTCCTCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGT 1405 Query 164097 ATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACT 164156 | ||||||||||| ||||||||||||||| | ||| |||| || || || ||| | |||| Sbjct 1406 ACGGAAACAACATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACT 1465 Query 164157 TCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCC 164216 ||||||| |||||||||||||| | | || || ||| | |||||||||||||||| || Sbjct 1466 TCTACCCAATCTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACC 1525 Query 164217 AACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCT--TACATGGGTCGTGAGTGGGA 164274 || | ||||| | |||||| | | || | |||| | |||||||| ||||| ||||| Sbjct 1526 AATTAGTTGTATGCCACTTTTTCTTAGG--TGTATGTTGCTACATGGGGCGTGAATGGGA 1583 Query 164275 ACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGC 164334 ||||||| |||| | |||||||| ||||||||| ||||| |||||||| || || || Sbjct 1584 GCTTTCTTTCCGTTTAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGC 1643 Query 164335 TGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAAT 164394 || || | ||| |||||| | |||| ||| |||||||||| ||||| ||| | || Sbjct 1644 AGCTGCTACTGCTGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTAT 1703 Query 164395 GCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACAT 164454 ||| | || ||||| || || || |||| ||| | || ||||| |||||||||||||| Sbjct 1704 GCCCTTAGGTATCTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACAT 1763 Query 164455 CCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAG 164514 | | |||||||| ||||| ||| | || || |||||||| ||||| |||||||| ||| Sbjct 1764 CTTAATGCACCCTTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTC 1823 Query 164515 TGCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTC 164574 ||| ||||| ||||| | || ||||| || | | ||||| || || || || | || Sbjct 1824 TGCTATGCATGGTTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATC 1883 Query 164575 CCAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCA 164634 ||| | |||||||| || ||||| ||||||||||| |||||||| ||||| || || Sbjct 1884 TGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCA 1943 Query 164635 CGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCA 164694 |||||||||||| ||| ||||||||||||||||||| ||||||||||| ||||| | || Sbjct 1944 CGGTTACTTTGGGCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACA 2003 Query 164695 CTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCAC 164754 ||||||| | || |||||||| || || || ||||||||||||||| | || | || Sbjct 2004 CTTCTTCTTAGCTGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAAC 2063 Query 164755 CATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCG 164814 |||||||| ||||| |||||||||||||| ||||| || | | || ||| ||||| Sbjct 2064 TATGGCATTTAACCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCG 2123 Query 164815 TGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCA 164874 ||| | ||||| ||||| ||| || ||||||||||| || || ||||| || ||||| Sbjct 2124 TGTAATTAACACATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCA 2183 Query 164875 CGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCT 164911 ||| ||||| |||||||||||||| || ||| | ||| Sbjct 2184 CGAACGTAACGCTCACAACTTCCCACTTGACTTAGCT 2220 >seq7 Length=22195 Score = 549 bits (608), Expect = 2e-151 Identities = 719/992 (72%), Gaps = 10/992 (1%) Strand=Plus/Plus Query 165183 GACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 165242 |||||||| |||||||| || ||||| || | | || ||||| || || ||||||||| Sbjct 4141 GACCGTTTTGTTTTTGTAGGTTGGTCAGGTTTATTACTCTTTCCTACAGCATATCTTGCT 4200 Query 165243 CTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTTGCG 165302 | || || ||| | ||||||| |||||| || || ||||||||||||||| | || Sbjct 4201 TTAGGTGGATGGTTAACTGGGATTACTTTTGTAACTTCTTGGTATACTCACGGTTTAGCA 4260 Query 165303 AGTTCCTATCTTGAGGGTGCAAACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAGACGC 165361 | | | || || ||| || ||||||| |||| |||||||| ||||||||| || Sbjct 4261 ACTAGTTTCCTAGAAGGTTGTAA-TTTCTTAACTGCTGCAGTTTCAACTCCAGCAAACAG 4319 Query 165362 TATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTG 165421 ||||||||||||| | || |||| ||||| || || ||||| || || | || || Sbjct 4320 TATGGGTCATTCTTTATTGTTTCTTTGGGGACCAGAAGCTCAATCTGATTTTACTCGTTG 4379 Query 165422 GTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGG 165481 || ||| | || || || ||| | ||||| || || || ||||| ||||| | || || Sbjct 4380 GTTTCAATTAGGCGGGCTTTGGGCATTTGTAGCTCTTCATGGAGCTTTTGCTTTAATTGG 4439 Query 165482 TTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGTA----TTCGTCCTTACAATG 165537 ||| ||| | ||||| |||||| | || || || ||| ||||||||||||||| Sbjct 4440 TTTTATGTTACGCCAATTTGAAATTGCTCGT----TCAGTAAGACTTCGTCCTTACAATG 4495 Query 165538 CTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGG 165597 ||||||| || || | ||||||||||| || ||| ||||||| | || || || | | Sbjct 4496 CTATTGCGTTTTCAGCACCTATTGCTGTTTTTGTTTCTGTTTTTTTAATTTACCCGTTAG 4555 Query 165598 GACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGC 165657 | || || ||||| || || || || || | || ||||||| |||||| | | Sbjct 4556 GTCAGTCTGGTTGGTTTTTTGCTCCTAGTTTTGGTATTGCTTCAATCTTTCGATTCATTC 4615 Query 165658 TCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAG 165717 | || ||||||| ||||| |||||||| | || || || ||||||||||| ||||| | Sbjct 4616 TTTTTTTCCAAGGATTCCACAACTGGACTTTAAACCCTTTCCACATGATGGGAGTAGCTG 4675 Query 165718 GTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGT 165777 || | ||||| | || ||||||| ||| ||||| |||| || || || || ||| | | Sbjct 4676 GTGTATTAGGTGCTGCTTTGCTTTGTGCGATTCACGGTGCAACTGTTGAAAACACTCTTT 4735 Query 165778 ATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAA 165837 |||||||||||| |||||||||||| |||||| | ||||| | ||| |||| Sbjct 4736 TTGAAGATGGTGATGGTGCAAACACTTTCCGTGCATTTAACCCAACTCAAGCAGAAGAAA 4795 Query 165838 CTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCA 165897 | || || | || || ||||| |||||||||||||| || |||||| | ||||| | Sbjct 4796 CGTACTCTTTCGTGACAGCTAATCGTTTCTGGTCTCAAATCTTTGGTGTAGCTTTTTCAA 4855 Query 165898 ATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTT 165957 | || || ||||||||||| |||||| | ||||| || || | || | |||| ||| Sbjct 4856 ACAAACGATGGCTTCACTTTTTTATGTTATTTGTGCCAGTAACTGGTTTATGGATGAGTG 4915 Query 165958 CTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGA 166017 | ||||| | | ||| | ||| | ||||| || ||||| ||||| || ||||| || | Sbjct 4916 CACTTGGTGTTGTAGGTTTAGCATTAAATCTACGAGCTTACGATTTCGTATCTCAAGAAA 4975 Query 166018 TTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATG 166077 || | || || || ||||| || ||||| || || || || |||||||| || | || | Sbjct 4976 TTCGTGCAGCAGAAGATCCTGAATTTGAGACTTTTTACACAAAAAACATTCTTTTAAACG 5035 Query 166078 AAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTG 166137 |||| | ||||| ||| ||||| || ||| || || ||||| || |||| ||||||| Sbjct 5036 AAGGTATTCGTGCATGGATGGCTGCTCAAGATCAGCCACATGAAAAAATTGTATTCCCTG 5095 Query 166138 AAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 | || || || ||| | || ||||| |||||| Sbjct 5096 AGGAGGTATTACCACGTGGAAACGCTCTTTAA 5127 >seq262 Length=217181 Score = 102 bits (112), Expect = 9e-17 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 161555 TACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGTCGTGCAGGC 161614 |||||||||||||||||||||||||| || | ||| | ||||| || ||||| || Sbjct 216365 TACATTCTTGACGCAGCTGAGGAAGCTGGCATCGACCTGCCATACTCTTGCCGTGCTGGA 216424 Query 161615 GCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 161674 || || ||||| ||||| || || | | ||||| ||||| ||||||||||| Sbjct 216425 GCCTGCTCGTCATGCGCTGGCAAGATTGAGGCTGGCGAGACTGACCAGAGCGACCAGTCA 216484 Query 161675 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCCACG 161734 || ||||||| ||| |||| |||||| | ||||| || || |||| || || Sbjct 216485 TTTTTGGACGACAGCCAGGTCGAGAACGGTTTCGTCCTGACCTGCGTGGCTTACCCAACC 216544 Query 161735 AGCGAT 161740 |||||| Sbjct 216545 AGCGAT 216550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557649680849640