Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq26 780 0.0 seq7 535 5e-147 >seq26 Length=15232 Score = 780 bits (864), Expect = 0.0 Identities = 771/994 (78%), Gaps = 2/994 (0%) Strand=Plus/Plus Query 177589 TGGGAACAATTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTC 177648 |||| || || ||| | |||||||| || || | || ||| | || | |||||||| Sbjct 1228 TGGGCACGCTTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTT 1287 Query 177649 GGTGTCCTGATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGT 177707 ||||| | ||||||||||| || | |||| | | |||| || || | || || || Sbjct 1288 GGTGTTTTAATGATCCCTACTCTTTTAACTGCAACAA-CTGTGTTTATTATTGCATTTGT 1346 Query 177708 CGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTA 177767 || ||||||||||||||||||||||| || ||||| || || ||||||||||| |||| Sbjct 1347 AGCAGCTCCTCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTA 1406 Query 177768 TGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTT 177827 || |||||||| || |||||||||||||||||| |||| || || |||||| | ||||| Sbjct 1407 CGGAAACAACATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTT 1466 Query 177828 CTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCA 177887 ||| || |||||||||||||||||| | ||||||||| | ||||| |||||||||| ||| Sbjct 1467 CTACCCAATCTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCA 1526 Query 177888 ACTCGTTATCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACT 177947 | | ||| | | |||||| | | ||| | | | |||||||| ||||| ||||| || Sbjct 1527 ATTAGTTGTATGCCACTTTTTCTTAGGTGTATGTTGCTACATGGGGCGTGAATGGGAGCT 1586 Query 177948 TTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGC 178007 ||||| ||| |||||||||| || ||||| |||||| |||||||| ||||| || || Sbjct 1587 TTCTTTCCGTTTAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGC 1646 Query 178008 AGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCC 178067 || ||||||| ||| || | || ||| |||||||||| ||||| ||||| |||||| Sbjct 1647 TGCTACTGCTGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCC 1706 Query 178068 CCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCT 178127 | | |||||| || || || |||| ||| |||| |||||||| |||||||||||| | Sbjct 1707 CTTAGGTATCTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTT 1766 Query 178128 GATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGC 178187 |||||||| ||||||||||| || || || ||||| |||||||||||||| ||| ||| Sbjct 1767 AATGCACCCTTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGC 1826 Query 178188 GATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCA 178247 ||||| ||||| | || ||||| || | | |||||||| || |||||| || | Sbjct 1827 TATGCATGGTTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGC 1886 Query 178248 GAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGG 178307 ||| | |||||||| ||||||||||||||||| || |||||||| |||||||| || || Sbjct 1887 TAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGG 1946 Query 178308 TTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTT 178367 |||||| || || |||| ||||||||||| || ||||||||||| ||||| | ||||| Sbjct 1947 TTACTTTGGGCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTT 2006 Query 178368 CTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCAT 178427 |||| | || |||||||| || || || |||||||| |||||| | ||| | || || Sbjct 2007 CTTCTTAGCTGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTAT 2066 Query 178428 GGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGT 178487 |||||| ||||| |||||||||||||| ||||| || | | || ||| || || Sbjct 2067 GGCATTTAACCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGT 2126 Query 178488 CCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGA 178547 | ||||| ||||| ||| || ||||||||||| || |||||||| || |||||||| Sbjct 2127 AATTAACACATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGA 2186 Query 178548 GCGTAATGCTCACAACTTCCCTCTTGACCTCGCT 178581 ||||| |||||||||||||| |||||| | ||| Sbjct 2187 ACGTAACGCTCACAACTTCCCACTTGACTTAGCT 2220 >seq7 Length=22195 Score = 535 bits (592), Expect = 5e-147 Identities = 732/1020 (72%), Gaps = 2/1020 (0%) Strand=Plus/Plus Query 178833 GGGTGGTTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGG 178892 || ||||||||| | | ||||| ||| | || || || || |||||||| |||||| Sbjct 4105 GGTTGGTTTGATACAGTAGATGATTGGGTACGCCGCGACCGTTTTGTTTTTGTAGGTTGG 4164 Query 178893 TCAGGTCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACA 178952 |||||| | | || || ||||| || || | || | || || ||| | || || | Sbjct 4165 TCAGGTTTATTACTCTTTCCTACAGCATATCTTGCTTTAGGTGGATGGTTAACTGGGATT 4224 Query 178953 ACATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAAT 179012 || || || || || |||||||||||||| | || || | || || || |||||| Sbjct 4225 ACTTTTGTAACTTCTTGGTATACTCACGGTTTAGCAACTAGTTTCCTAGAAGGTTGTAAT 4284 Query 179013 TTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTA 179072 ||| | |||||||| || |||||||| || || | | || ||||| || | |||| Sbjct 4285 TTCTTAACTGCTGCAGTTTCAACTCCAGCAAACAGTATGGGTCATTCTTTATTGTTTCTT 4344 Query 179073 TGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCT 179132 ||||| ||||||||||| ||||| || ||| | ||| | || || || ||| | Sbjct 4345 TGGGGACCAGAAGCTCAATCTGATTTTACTCGTTGGTTTCAATTAGGCGGGCTTTGGGCA 4404 Query 179133 TTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATC 179192 ||||| || || || || || || ||| | || ||||| ||| | || || |||||||| Sbjct 4405 TTTGTAGCTCTTCATGGAGCTTTTGCTTTAATTGGTTTTATGTTACGCCAATTTGAAATT 4464 Query 179193 GCACGTCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTC 179252 || ||| ||| | |||||||||||||||| || |||||||| | || |||||||| Sbjct 4465 GCTCGTTCAGTAAGACTTCGTCCTTACAATGCTATTGCGTTTTCAGCACCTATTGCTGTT 4524 Query 179253 TTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCG 179312 ||||| ||||||||| | || || || | || ||||| ||||| ||||| || Sbjct 4525 TTTGTTTCTGTTTTTTTAATTTACCCGTTAGGTCAGTCTGGTTGGTTTTTTGCTCCTAGT 4584 Query 179313 TTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACG 179372 ||||| |||| | || || || ||| | || || | || || |||||||||||||| Sbjct 4585 TTTGGTATTGCTTCAATCTTTCGATTCATTCTTTTTTTCCAAGGATTCCACAACTGGACT 4644 Query 179373 CTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCC 179432 | ||||| |||||||||||||| ||||| ||| | | || | || ||||||||||| Sbjct 4645 TTAAACCCTTTCCACATGATGGGAGTAGCTGGTGTATTAGGTGCTGCTTTGCTTTGTGCG 4704 Query 179433 ATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTC 179492 ||||| ||||| || || || ||||| || |||||||| |||| |||| || ||| Sbjct 4705 ATTCACGGTGCAACTGTTGAAAACACTCTTTTTGAAGATGGTGATGGTGCAAACACTTTC 4764 Query 179493 AAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTC 179552 ||||| | || || |||| ||| || || || || | || || || || |||||| Sbjct 4765 CGTGCATTTAACCCAACTCAAGCAGAAGAAACGTACTCTTTCGTGACAGCTAATCGTTTC 4824 Query 179553 TGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTG 179612 |||||||| ||||||||| | || || || || || ||||| || || |||||||| Sbjct 4825 TGGTCTCAAATCTTTGGTGTAGCTTTTTCAAACAAACGATGGCTTCACTTTTTTATGTTA 4884 Query 179613 TTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCA-TTGGTATTATTGGTCTTGCACTTAA 179671 ||||| || || | ||| | |||| | ||| ||||| || | ||| | ||| | || Sbjct 4885 TTTGTGCCAGTAACTGGTTTATGGATGAGT-GCACTTGGTGTTGTAGGTTTAGCATTAAA 4943 Query 179672 CCTTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGA 179731 || ||||||| || || || || ||||| || | || ||||| |||||||| || || Sbjct 4944 TCTACGAGCTTACGATTTCGTATCTCAAGAAATTCGTGCAGCAGAAGATCCTGAATTTGA 5003 Query 179732 GACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGT 179791 ||| || || || || ||||| || || || |||||| | ||||| |||||||| | Sbjct 5004 GACTTTTTACACAAAAAACATTCTTTTAAACGAAGGTATTCGTGCATGGATGGCTGCTCA 5063 Query 179792 CGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 ||||| ||||||||||| ||||||| ||||| || ||||| ||| | || |||||||| Sbjct 5064 AGATCAGCCACATGAAAAAATTGTATTCCCTGAGGAGGTATTACCACGTGGAAACGCTCT 5123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596302153750320