Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq26 733 0.0 seq7 480 1e-130 >seq26 Length=15232 Score = 733 bits (812), Expect = 0.0 Identities = 763/996 (77%), Gaps = 6/996 (1%) Strand=Plus/Plus Query 169343 TGGGAACAATTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTC 169402 |||| || || ||| | |||||||| || ||||| |||||| | || | |||||||| Sbjct 1228 TGGGCACGCTTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTT 1287 Query 169403 GGCGTCCTGATGATCCCCTGCCTGCTGGCAGCAACCACT-TGTTTCATCATCGCCTTCAT 169461 || || | |||||||| || | | ||||| ||| ||||| || || || || | Sbjct 1288 GGTGTTTTAATGATCCCTACTCTTTTAACTGCAACAACTGTGTTT-ATTATTGCATTTGT 1346 Query 169462 CGGTGCTCCCCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTA 169521 | ||||| ||||||||||||||||| || || || || || ||||||| ||| |||| Sbjct 1347 AGCAGCTCCTCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTA 1406 Query 169522 TGGTAACAACATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTT 169581 || |||||||| ||||||||||||||||| || |||| || ||||| ||| | ||||| Sbjct 1407 CGGAAACAACATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTT 1466 Query 169582 CTATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCA 169641 ||| || |||||||||||||| | | ||||| ||||| |||||||||||||||| ||| Sbjct 1467 CTACCCAATCTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCA 1526 Query 169642 ACTGGTTGTCTTCCACTTCCTCATCGGCATCTATGCT--TACATGGGTCGTGAGTGGGAA 169699 | | ||||| | |||||| || | || | |||| | |||||||| ||||| ||||| Sbjct 1527 ATTAGTTGTATGCCACTTTTTCTTAGG--TGTATGTTGCTACATGGGGCGTGAATGGGAG 1584 Query 169700 TTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCG 169759 | || | ||| | ||||||||||||||||| ||| ||||||||||| || ||||| Sbjct 1585 CTTTCTTTCCGTTTAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCA 1644 Query 169760 GCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATG 169819 || || | ||||| ||| | ||||||| | || |||||||| || ||||| |||| Sbjct 1645 GCTGCTACTGCTGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATG 1704 Query 169820 CCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATC 169879 || | |||||||| || || ||||||| ||| | || ||||||||||||||||||||| Sbjct 1705 CCCTTAGGTATCTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATC 1764 Query 169880 CTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGC 169939 | |||||||| ||||||||| | |||||||| || || |||||||| ||||| || Sbjct 1765 TTAATGCACCCTTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCT 1824 Query 169940 GCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCC 169999 || ||||| ||| | || ||||| | |||||||||| || |||||| | || Sbjct 1825 GCTATGCATGGTTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCT 1884 Query 170000 CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCAC 170059 ||| | |||||||| ||||||||||||||||| || |||||||| ||||| || ||| Sbjct 1885 GCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCAC 1944 Query 170060 GGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCAC 170119 |||||||| || || |||| |||||||||||||| ||||||||||| ||||| | ||| Sbjct 1945 GGTTACTTTGGGCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACAC 2004 Query 170120 TTCTTCCTCGCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACG 170179 |||||| | || |||||||| || || || |||||||| || ||| | ||| | || || Sbjct 2005 TTCTTCTTAGCTGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACT 2064 Query 170180 ATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGT 170239 ||||| || ||||| |||||||||||||| ||||| || | | || ||| |||||| Sbjct 2065 ATGGCATTTAACCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGT 2124 Query 170240 GTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCAC 170299 || | ||||| ||||| ||| || ||||||||||| || || ||||| || |||||| Sbjct 2125 GTAATTAACACATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCAC 2184 Query 170300 GAGCGTAATGCTCACAACTTCCCTCTCGACCTCGCT 170335 || ||||| |||||||||||||| || ||| | ||| Sbjct 2185 GAACGTAACGCTCACAACTTCCCACTTGACTTAGCT 2220 >seq7 Length=22195 Score = 480 bits (532), Expect = 1e-130 Identities = 721/1024 (70%), Gaps = 0/1024 (0%) Strand=Plus/Plus Query 170589 GGGTGGTTCGATGTCCTGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGG 170648 || ||||| ||| | ||||| ||| | || || || ||||| ||||| || ||| Sbjct 4105 GGTTGGTTTGATACAGTAGATGATTGGGTACGCCGCGACCGTTTTGTTTTTGTAGGTTGG 4164 Query 170649 TCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACG 170708 || || | | || ||||| || || |||||||| | || || ||| | || || | Sbjct 4165 TCAGGTTTATTACTCTTTCCTACAGCATATCTTGCTTTAGGTGGATGGTTAACTGGGATT 4224 Query 170709 ACATTTGTTACAAGTTGGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAAT 170768 || ||||| || |||||| || ||||| | |||| | | ||| |||||| |||| Sbjct 4225 ACTTTTGTAACTTCTTGGTATACTCACGGTTTAGCAACTAGTTTCCTAGAAGGTTGTAAT 4284 Query 170769 TTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT 170828 ||| | || || || || ||||| || || | ||||||||||||| | | | ||| Sbjct 4285 TTCTTAACTGCTGCAGTTTCAACTCCAGCAAACAGTATGGGTCATTCTTTATTGTTTCTT 4344 Query 170829 TGGGGTCCTGAGTCTCAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAAT 170888 ||||| || || |||| ||||| || ||||| ||| | || || || ||| Sbjct 4345 TGGGGACCAGAAGCTCAATCTGATTTTACTCGTTGGTTTCAATTAGGCGGGCTTTGGGCA 4404 Query 170889 TTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATC 170948 ||||| || || || ||||| |||||| | || ||||| ||| | || || |||||||| Sbjct 4405 TTTGTAGCTCTTCATGGAGCTTTTGCTTTAATTGGTTTTATGTTACGCCAATTTGAAATT 4464 Query 170949 AGTCGTCTCGTAGGGATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTG 171008 |||| ||| | || | || |||||||| || || || || | ||||| ||||| Sbjct 4465 GCTCGTTCAGTAAGACTTCGTCCTTACAATGCTATTGCGTTTTCAGCACCTATTGCTGTT 4524 Query 171009 TTTGTCAGCGTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCC 171068 ||||| || || | || || || | || ||||| ||||||| || || ||| Sbjct 4525 TTTGTTTCTGTTTTTTTAATTTACCCGTTAGGTCAGTCTGGTTGGTTTTTTGCTCCTAGT 4584 Query 171069 TTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACA 171128 ||||| |||| ||||||| || ||| | || || | ||||| |||||||||||||| Sbjct 4585 TTTGGTATTGCTTCAATCTTTCGATTCATTCTTTTTTTCCAAGGATTCCACAACTGGACT 4644 Query 171129 CTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCA 171188 | || || || || |||||||| || || ||| | | || | ||| ||||||| ||| Sbjct 4645 TTAAACCCTTTCCACATGATGGGAGTAGCTGGTGTATTAGGTGCTGCTTTGCTTTGTGCG 4704 Query 171189 ATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTT 171248 ||||| |||| || || || || ||| | | ||||||||||||| |||||||| || Sbjct 4705 ATTCACGGTGCAACTGTTGAAAACACTCTTTTTGAAGATGGTGATGGTGCAAACACTTTC 4764 Query 171249 AAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTC 171308 |||||| || | ||||| | ||||| || || ||| | || || |||||||||||| Sbjct 4765 CGTGCATTTAACCCAACTCAAGCAGAAGAAACGTACTCTTTCGTGACAGCTAATCGTTTC 4824 Query 171309 TGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTG 171368 ||||| || || |||||| | || || || || || ||| | || || |||||| | Sbjct 4825 TGGTCTCAAATCTTTGGTGTAGCTTTTTCAAACAAACGATGGCTTCACTTTTTTATGTTA 4884 Query 171369 TTTGTTCCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAAT 171428 ||||| || || | ||| | ||| | ||| || || || | ||| | || | ||| Sbjct 4885 TTTGTGCCAGTAACTGGTTTATGGATGAGTGCACTTGGTGTTGTAGGTTTAGCATTAAAT 4944 Query 171429 CTTAGGGCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAG 171488 || | ||||| ||||||||| ||| || | | |||||||||||||| || || ||| Sbjct 4945 CTACGAGCTTACGATTTCGTATCTCAAGAAATTCGTGCAGCAGAAGATCCTGAATTTGAG 5004 Query 171489 ACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTA 171548 || || || || || ||||| || || || |||||| |||||||||||||||| | | Sbjct 5005 ACTTTTTACACAAAAAACATTCTTTTAAACGAAGGTATTCGTGCATGGATGGCTGCTCAA 5064 Query 171549 GACCAACCACATGAAAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTT 171608 || || ||||||||||| |||| ||||| ||||| || |||| ||||| || || ||| Sbjct 5065 GATCAGCCACATGAAAAAATTGTATTCCCTGAGGAGGTATTACCACGTGGAAACGCTCTT 5124 Query 171609 TGAT 171612 | || Sbjct 5125 TAAT 5128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592193388521040