Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq33 176 9e-39 seq264 170 4e-37 seq200 100 6e-16 seq242 96.9 7e-15 seq45 96.9 7e-15 seq118 93.3 9e-14 seq283 84.2 5e-11 seq255 84.2 5e-11 >seq33 Length=490745 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || |||||||| | ||| ||| || || ||||||||||| || Sbjct 196169 CCACCACGCAGACGCAGCACCAGATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCC 196110 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || ||||||||||| || || || || ||||||||||| || || |||||| ||| Sbjct 196109 AAAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCAGGAGGA 196050 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| || ||||| | ||| || | || || ||||| || | || ||| Sbjct 196049 ATACCCTCCTTGTCCTGAATCTTGGATTTGACATTGTCAATGGTGTCTGATGACTCCACT 195990 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||| ||||| || |||| |||||| || || || ||||| Sbjct 195989 TCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 195943 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| ||||| ||||| || | ||| || || ||||||||||| ||||| Sbjct 197533 CCACCACGCAGACGAAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCC 197474 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | |||||||||||||| || || || || |||||||||| ||| || |||||| ||| Sbjct 197473 AAAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGA 197414 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||| | || || | || || ||||| || | || || Sbjct 197413 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCTGATGACTCCACC 197354 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || |||| ||||| || || |||||||| Sbjct 197353 TCCAGTGTGATTGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 197307 Score = 100 bits (110), Expect = 6e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || |||| ||| || ||| || || |||||||||||||| || Sbjct 196739 CCTCCACGCAGACGCAGCACCAAATGCAATGTGGACTCCTTCTGGATGTTGTAGTCTGCC 196680 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | |||||||||||||| || || || || |||||||||| ||| || |||||| || Sbjct 196679 AAAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGG 196620 Query 282993 ATACC 282997 ||||| Sbjct 196619 ATACC 196615 Score = 100 bits (110), Expect = 6e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || |||| || | ||| ||||| ||||||||||||||||| Sbjct 197305 CCTCCACGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCC 197246 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||||||||| || || || || |||||||||| ||| || |||||| || Sbjct 197245 AGAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGG 197186 Query 282993 ATACC 282997 ||||| Sbjct 197185 ATACC 197181 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||||||||||||||| |||||||||||||| || || || || |||||| Sbjct 195905 TCCTTCTGAATGTTGTAGTCAGCAAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAG 195846 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACC 282997 |||| ||| || |||||| ||||| || Sbjct 195845 ATCAGACGCTGCTGGTCAGGGGGAATGCC 195817 Score = 86.0 bits (94), Expect = 1e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || || || |||||||| | ||| || || |||||||||||||| || Sbjct 195596 ACCTCCGCGAAGTCGCAGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 195537 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 ||| || || || ||||| || || || || ||||| |||||||| || |||||| Sbjct 195536 AAGTGTACGTCCGTCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCA 195482 >seq264 Length=364395 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || |||||||| | ||| || || ||||||||||||||||| Sbjct 31793 CCACCACGCAGACGCAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 31734 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | |||||||||||||| | || || || |||||||||| ||| || |||||| || Sbjct 31733 AAGGTGCGGCCATCCTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGG 31674 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||| | || || | ||||| ||||| |||| || || Sbjct 31673 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCAACC 31614 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||| ||||| || ||||| ||||| || || || ||||| Sbjct 31613 TCCAAAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATTTGCAT 31567 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || | || || || | ||| ||| || || |||||||||||||| Sbjct 32665 CCACCACGCAGACGCAACACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCC 32606 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| || ||||| || |||||||||| ||| || |||||| || Sbjct 32605 AGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGG 32546 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||| | || || | || || ||||| |||| ||||| Sbjct 32545 ATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCGACC 32486 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||| ||||| || ||||| ||||| || || || ||||| Sbjct 32485 TCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 32439 Score = 116 bits (128), Expect = 8e-21 Identities = 94/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| ||||| |||||||| || ||| || || || ||||||||||||||| Sbjct 31565 CCACCACGCAGACGAAGGACCAGATGCAATGTGGACTCCTTCTGAATGTTGTAGTCAGCA 31506 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 || || || |||||||| || || || || |||||||||||||| || |||||| Sbjct 31505 AGAGTACGACCATCCTCGAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCA 31452 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || |||| ||| | ||| || || |||||||||||||| || Sbjct 31229 ACCACCACGCAGACGCAGGACCAAATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGC 31170 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| || ||||| || || || ||||| ||||| | ||| || |||||| || Sbjct 31169 AAGAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGAGG 31110 Query 282992 AATACC 282997 |||||| Sbjct 31109 AATACC 31104 Score = 93.3 bits (102), Expect = 9e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| ||||| |||| ||| | || || || ||||||||||||||||| Sbjct 32437 CCACCACGCAGACGAAGGACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCC 32378 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 | || || |||||||| || || || || |||||||||| ||| || |||||| Sbjct 32377 AAGGTACGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCA 32324 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 ||| ||||||||||| ||||||| || ||| | ||||| ||||| |||| || || || Sbjct 31334 ACCTTCCTTGTCTTGAATCTTTGACTTCACGTTGTCGATGGTGTCTGAAGACTCCACCTC 31275 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | |||||||||||| || ||||| ||||| || || || ||||| Sbjct 31274 CAAAGTGATCGTCTTGCCGGTCAAGGTCTTGACAAAGATTTGCAT 31230 >seq200 Length=180262 Score = 100 bits (110), Expect = 6e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 316975 TCGGATCCGTCGAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAAC 317034 ||||| | |||| ||| ||||| || || | || ||| |||||| | ||||| Sbjct 13811 TCGGAGGCATCGATGTCGTGCTCGACGTACACTGTACGCAGCTGATCCTTGGGTGGGAAG 13752 Query 317035 CCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGG 317094 || |||| ||| ||||| | || | |||||| || ||||||||||| || || |||||| Sbjct 13751 CCCTCCAGCTGGCCGTTGGCGATGGACCTCATGAGAGTCGACTTGCCTGCGCCGTTGGGG 13692 Query 317095 CCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATC 317154 ||||| ||||| || || || || ||| || | | || | |||||| || || ||| Sbjct 13691 CCGCACAGACCGTAACGCTTGCCACGCTTGAGGTGCAGGCGAGCGTTGTTGAGCAGGATC 13632 Query 317155 TTACCACC 317162 || ||||| Sbjct 13631 TTGCCACC 13624 Score = 96.9 bits (106), Expect = 7e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 316166 TGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGAT 316225 |||||||||| || || || | ||| ||||| | ||||| ||| |||| || || | Sbjct 15817 TGTCTTCACCAGAGGCGTATCTCCACGCAATGTAGTCGTTGGGGGTCTTGTCTAGGTGCT 15758 Query 316226 CCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCC 316285 ||| ||||||||||| || ||||| |||||||| || | | || || || ||||||| Sbjct 15757 GCTCAATGTGGTGGAATGCATGCTGAGCCACGTAGGCCACTCTCAAGTTGGGGTGCTTCC 15698 Query 316286 AAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTTTTTC 316345 | || | || | | | ||||||| || || || |||| ||||| | || || | Sbjct 15697 ACACTGTGCCTTCATTGGTTTCCAGCTCTCCAGTGAGCAGCTTAATCATTGTGGACTTGC 15638 Query 316346 CCGCGCCGTTTTCACCCACGACACCGATCCTGGAGTTGAGCGATAC 316391 | || || ||| | || | |||| | | | |||||||| | ||| Sbjct 15637 CAGCTCCATTTGCTCCAATGACAGCCACGCGAGAGTTGAGGGTTAC 15592 >seq242 Length=310557 Score = 96.9 bits (106), Expect = 7e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 168749 CGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||| |||||||||| ||||| || ||||||||||| |||| |||||||||||||||| Sbjct 260964 CGAATTCGTATAGTGGTCAGTATTCCCGCCTGTCACGCGGGAGGCCGGGGTTCAATTCCC 260905 Query 168809 CGATTCGTCGC 168819 ||||||| ||| Sbjct 260904 CGATTCGGCGC 260894 >seq45 Length=345207 Score = 96.9 bits (106), Expect = 7e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 168749 CGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||| |||||||||| ||||| || ||||||||||| |||| |||||||||||||||| Sbjct 335461 CGAATTCGTATAGTGGTCAGTATTCCCGCCTGTCACGCGGGAGGCCGGGGTTCAATTCCC 335520 Query 168809 CGATTCGTCGC 168819 ||||||| ||| Sbjct 335521 CGATTCGGCGC 335531 >seq118 Length=380107 Score = 93.3 bits (102), Expect = 9e-14 Identities = 88/110 (80%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||||||||| |||||||| || | ||||| ||||| || | ||||| Sbjct 348821 TACCCTCCTTGTCTTGGATC-TTGCTTTTGACATTGTCGATGGTGTCTGATGACTCGACC 348879 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || | |||||| ||||| ||||| | ||||| || || |||||||| || Sbjct 348880 TCCAAAGTGATGGTCTTGCCCGTAAGGGTCTTCACAAAGATCTGCATGTT 348929 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 168749 CGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 || ||| |||||||||||||||| || ||||||||||| |||| |||| ||||||||| | Sbjct 136792 CGCATTCGTATAGTGGTTAGTATTCCCGCCTGTCACGCGGGAGGCCGGAGTTCAATTCTC 136851 Query 168809 CGATTCGTCGCG 168820 |||| || |||| Sbjct 136852 CGATGCGGCGCG 136863 >seq283 Length=247410 Score = 84.2 bits (92), Expect = 5e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 168749 CGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 || ||| |||||||||||||||| || ||||||||||| |||| |||| ||||||||| | Sbjct 207853 CGCATTCGTATAGTGGTTAGTATTCCCGCCTGTCACGCGGGAGGCCGGAGTTCAATTCTC 207912 Query 168809 CGATTCGTCGC 168819 |||| || ||| Sbjct 207913 CGATGCGGCGC 207923 >seq255 Length=111147 Score = 84.2 bits (92), Expect = 5e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 168749 CGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 || ||| |||||||||||||||| || ||||||||||| |||| |||| ||||||||| | Sbjct 35003 CGCATTCGTATAGTGGTTAGTATTCCCGCCTGTCACGCGGGAGGCCGGAGTTCAATTCTC 34944 Query 168809 CGATTCGTCGC 168819 |||| || ||| Sbjct 34943 CGATGCGGCGC 34933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046730120518758