Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq264 138 8e-28 seq33 138 8e-28 >seq264 Length=364395 Score = 138 bits (152), Expect = 8e-28 Identities = 174/237 (73%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | || |||||| ||||| ||| |||||| ||||||||||| Sbjct 31800 TTGCATGCCACCACGCAGACGCAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTA 31741 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || | ||| | || |||| |||||| || |||||||||| ||||||||| || Sbjct 31740 GTCAGCCAAGGTGCGGCCATCCTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTC 31681 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCG 44281 | ||| | || ||||| ||| ||||| ||| || ||| | |||||||| | Sbjct 31680 AGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGT--CGATGGTGTCTGAA 31623 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || ||||||| || || ||||| || || | |||||| || |||||||||||| Sbjct 31622 GACTCAACCTCCAAAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATTTGCATG 31566 Score = 134 bits (148), Expect = 1e-26 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | |||||| |||||||| ||| ||||| || |||||||| || || Sbjct 32665 CCACCACGCAGACGCAACACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCC 32606 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || |||||||| || || |||||||||| ||||||||| || | ||| Sbjct 32605 AGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGG 32546 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | || ||||| ||| ||||| ||| || ||| | |||||||| | || || | Sbjct 32545 ATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGT--CAATGGTGTCTGAAGACTCGA 32488 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||| || || ||||| || || | |||||| || |||||||||||| Sbjct 32487 CCTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCATG 32438 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | || |||| || || ||| |||||| ||||||||||| Sbjct 31235 TTGCATACCACCACGCAGACGCAGGACCAAATGCAGTGTGGACTCCTTCTGGATGTTGTA 31176 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| || ||| |||| || |||||||| ||||| ||||| | ||||||||| || Sbjct 31175 GTCGGCAAGAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTC 31116 Query 44224 TGAAGGCACACCT 44236 | ||| | |||| Sbjct 31115 AGGAGGAATACCT 31103 >seq33 Length=490745 Score = 138 bits (152), Expect = 8e-28 Identities = 159/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| |||||| |||||||||||||| || | ||| | || || Sbjct 197515 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAAGTGCGGCCATCCTCA 197456 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||||| ||||||||| || | ||| | || ||||| ||| Sbjct 197455 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 197396 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | |||||||| | || |||||||||| || || |||| Sbjct 197395 ATCTTGGACTTGACATTGT--CAATGGTGTCTGATGACTCCACCTCCAGTGTGATTGTCT 197338 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || |||||||| || ||||| |||||| Sbjct 197337 TGCCAGTCAGGGTCTTGACAAAGATCTGCATG 197306 Score = 120 bits (132), Expect = 2e-22 Identities = 170/237 (72%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | || |||||| || || ||| ||||| || |||||||| Sbjct 196176 TTGCATGCCACCACGCAGACGCAGCACCAGATGGAGGGTGGATTCCTTCTGAATGTTGTA 196117 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || | || | || || |||||||| || ||||||||||| |||||||| || Sbjct 196116 GTCTGCCAAAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTC 196057 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCG 44281 | ||| | ||| ||||| ||| ||||| || || ||| | |||||||| | Sbjct 196056 AGGAGGAATACCCTCCTTGTCCTGAATCTTGGATTTGACATTGT--CAATGGTGTCTGAT 195999 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||| |||| || || ||||| || || || ||||| || |||||||||||| Sbjct 195998 GACTCCACTTCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCATG 195942 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | |||| || ||||| || || ||| |||||| ||||||||||| || Sbjct 195599 CATACCTCCGCGAAGTCGCAGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 195540 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| ||| || |||| || |||||||| || ||||| |||||||||||||| || Sbjct 195539 GGCAAGTGTACGTCCGTCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTC 195483 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/136 (74%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || || | ||| | || ||||| || | ||| |||||| |||||||| Sbjct 196749 TATTTGCATGCCTCCACGCAGACGCAGCACCAAATGCAATGTGGACTCCTTCTGGATGTT 196690 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||| || || | ||| | || ||||||||||| || |||||||||| ||||||||| Sbjct 196689 GTAGTCTGCCAAAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTG 196630 Query 44221 ATCTGAAGGCACACCT 44236 || | ||| | |||| Sbjct 196629 GTCAGGAGGGATACCT 196614 Score = 82.4 bits (90), Expect = 5e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||| ||| || ||| ||| || ||||||||||| || Sbjct 197309 CATGCCTCCACGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTC 197250 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || || | || || |||||||| || |||||||||| ||||||||| || | Sbjct 197249 AGCCAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGG 197190 Query 44227 AGGCACACCT 44236 ||| | |||| Sbjct 197189 AGGGATACCT 197180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359987429741709