Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq264 140 8e-28 seq33 131 4e-25 seq47 102 2e-16 >seq264 Length=364395 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || || || ||||| | ||||| || |||||| Sbjct 32442 CAAATCTTTGTCAAGACCTTGACTGGCAAGACCATCACTTTGGAGGTCGAGTCTTCAGAC 32501 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||||||||||| || || |||||||| |||||||| Sbjct 32502 ACCATTGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAG 32561 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || |||||||| || |||||| | ||||| || || || ||| | Sbjct 32562 CGTCTGATCTTTGCTGGCAAACAGCTGGAGGATGGACGCACTCTGGCTGACTACAACATT 32621 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || ||||| || || || ||||| ||| Sbjct 32622 CAGAAGGAATCCACCCTTCACCTTGTGTTG 32651 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || || || ||||| | ||||| || |||||| Sbjct 31570 CAAATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTTTGGAGGTTGAGTCTTCAGAC 31629 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| |||||||||||||| || || |||||||| |||||||| Sbjct 31630 ACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAG 31689 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||| | || ||||| | || | || || || ||| || Sbjct 31690 CGTCTGATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGCACCTTGGCTGACTACAACATC 31749 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 31750 CAGAAGGAGTCCACCCTTCATCTGGT 31775 Score = 96.9 bits (106), Expect = 8e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||| || ||||| |||||||| || || ||||||||||| || |||||||| || || | Sbjct 31103 AGGTATTCCTCCTGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCG 31162 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||||||||| || ||| |||| || || || ||||||||| Sbjct 31163 CACTCTTGCCGACTACAACATCCAGAAGGAGTCCACACTGCAT 31205 >seq33 Length=490745 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || || || ||||| || |||||||| |||||| Sbjct 197310 CAGATCTTTGTCAAGACCCTGACTGGCAAGACAATCACACTGGAGGTGGAGTCATCAGAC 197369 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||||||||||| || || || ||||| |||||||| Sbjct 197370 ACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAG 197429 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || ||||| | ||| | || ||||| ||| || Sbjct 197430 CGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTTTGGCTGATTACAACATC 197489 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || || || ||| Sbjct 197490 CAGAAGGAGTCCACCCTCCACCTGGTT 197516 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||||| || || || || ||||| | || ||||| |||||| Sbjct 195946 CAAATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTTTGGAAGTGGAGTCATCAGAC 196005 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || |||||| |||||||||||||| || || || ||||| |||||||| Sbjct 196006 ACCATTGACAATGTCAAATCCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAGCAG 196065 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || ||||| || ||||| | ||| | || || || ||| | Sbjct 196066 CGGTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTTTGGCAGACTACAACATT 196125 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 196126 CAGAAGGAATCCACCCTCCATCTGGT 196151 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 195600 CAGATCTTCGTGAAGACCCTGACTGGCAAGACTATCACCCTGGAGGTGGAGTCATCTGAC 195659 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| ||||| || |||||||||||||| ||||| Sbjct 195660 ACCATCGACAACGTTAAGAGCAAGATTCAGGACAAGGAAGG 195700 >seq47 Length=350483 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 178011 CAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTC 178070 |||||||||||||| || || || || ||||| || || ||||| || || || ||| | Sbjct 106496 CAGGACAAAGAAGGCATTCCACCTGATCAGCAGCGCCTCATCTTTGCTGGCAAGCAGTTG 106437 Query 178071 GAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 || ||||| |||||| | || || || ||| | || || |||||||| | |||||||| Sbjct 106436 GAGGATGGCAGGACTTTGGCAGACTACAACATTCAGAAGGAATCAACCTTACATCTTGTG 106377 Query 178131 TTGAGACTCAGATA 178144 ||||| ||||| || Sbjct 106376 TTGAGGCTCAGGTA 106363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203720758760338