Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq33 120 3e-22 seq264 111 1e-19 >seq33 Length=490745 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| || || ||| ||||||||| ||||| || || | Sbjct 197534 GCCACCACGCAGACGAAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGC 197475 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| | || || ||||||||||| || || ||||| ||||| ||||| | || Sbjct 197474 CAAAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 197415 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||||||| ||| | || | | || | | | ||||| ||||||| Sbjct 197414 AATGCCCTCCTTGTCC-TGAATCTTGGACTTGACATTGTCAATGGTGTCTGATGACTCCA 197356 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || || || || || ||||| ||||| || || ||||||||| Sbjct 197355 CCTCCAGTGTGATTGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATG 197306 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||||||| || ||| |||||||||||||| ||||| | Sbjct 196170 GCCACCACGCAGACGCAGCACCAGATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGC 196111 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | || || | || || ||||||||||| || || |||| ||||| ||||| | || Sbjct 196110 CAAAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCAGGAGG 196051 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | |||||||||| ||| | || | || || | | | ||||| ||||||| Sbjct 196050 AATACCCTCCTTGTCC-TGAATCTTGGATTTGACATTGTCAATGGTGTCTGATGACTCCA 195992 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||| || || || || || ||||| ||||| || || || |||||| Sbjct 195991 CTTCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCATG 195942 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| ||||||| || || ||| ||||||||||||||| ||||| | || ||||| Sbjct 195932 AGACGCAACACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTGCGG 195873 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGC 41759 | || || ||||||||||| || || ||||| ||||| ||||| | ||||| || Sbjct 195872 CCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGAATGC 195818 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | |||||||| || ||| ||||||||| ||||| ||||||| Sbjct 195595 CCTCCGCGAAGTCGCAGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCA 195536 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 || || || |||| || ||||||||||| || || |||| ||||| ||||| Sbjct 195535 AGTGTACGTCCGTCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTC 195483 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| ||||| ||| ||||||||| ||||| ||||| | Sbjct 196740 GCCTCCACGCAGACGCAGCACCAAATGCAATGTGGACTCCTTCTGGATGTTGTAGTCTGC 196681 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 | ||||| | || || ||||||||||| || || ||||| ||||| ||||| Sbjct 196680 CAAAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTC 196627 >seq264 Length=364395 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| ||||| || || || ||| |||||||||||||| ||||| | Sbjct 32666 GCCACCACGCAGACGCAACACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGC 32607 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || ||||| ||||| || || ||||| ||||| ||||| | || Sbjct 32606 CAGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 32547 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| | || | | || | | | ||||| ||||| | Sbjct 32546 GATGCCCTCCTTGTCC-TGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCGA 32488 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || || || || || |||| ||||| || || || |||||| Sbjct 32487 CCTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCATG 32438 Score = 105 bits (116), Expect = 6e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| |||||| ||| ||||||||| ||||| ||||||| Sbjct 31228 CCACCACGCAGACGCAGGACCAAATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCA 31169 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| |||||||||||||||||||| || || ||||| ||||| | ||| Sbjct 31168 AGAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGA 31109 Query 41756 A 41756 | Sbjct 31108 A 31108 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||||||| ||| ||||||||||||||| ||||| | Sbjct 31566 GCCACCACGCAGACGAAGGACCAGATGCAATGTGGACTCCTTCTGAATGTTGTAGTCAGC 31507 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 || || || | || |||||||||||||| || || |||| ||||| ||||| Sbjct 31506 AAGAGTACGACCATCCTCGAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTC 31453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462300087752400