Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq20 96.9 7e-15 seq5 93.3 9e-14 seq603 91.5 3e-13 seq424 91.5 3e-13 seq398 91.5 3e-13 seq130 91.5 3e-13 seq58 91.5 3e-13 seq10 91.5 3e-13 seq1 91.5 3e-13 seq618 87.8 4e-12 seq441 87.8 4e-12 seq247 87.8 4e-12 seq173 87.8 4e-12 seq43 87.8 4e-12 seq33 87.8 4e-12 seq15 87.8 4e-12 seq11 87.8 4e-12 seq68 86.0 1e-11 >seq20 Length=1927901 Score = 96.9 bits (106), Expect = 7e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 ||||||||| |||||||||||||||||||| || || |||| || |||||||||||||| Sbjct 614150 GCTTGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 614091 Query 165766 GAGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 614090 GAGCCCCACATTGGGC 614075 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 528631 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 528690 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 528691 CCCACATTGGGC 528702 >seq5 Length=2431615 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||| |||||||||||||||||||| || || |||| || |||||||||||||||| Sbjct 1357536 TTGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 1357595 Query 165768 GCCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1357596 GCCCCACATTGGGC 1357609 >seq603 Length=6670 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 137 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 78 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 77 CCCCACATTGGGC 65 >seq424 Length=8690 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 7237 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 7178 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 7177 CCCCACATTGGGC 7165 >seq398 Length=7853 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 5423 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5364 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 5363 CCCCACATTGGGC 5351 >seq130 Length=132207 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 1659 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1718 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 1719 CCCCACATTGGGC 1731 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 4999 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5058 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 5059 CCCCACATTGGGC 5071 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 14247 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 14306 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 14307 CCCCACATTGGGC 14319 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || |||||||||| |||||| Sbjct 20448 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGATTCGAG 20507 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 20508 CCCCACATTGGGC 20520 >seq58 Length=829714 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 473753 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 473812 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 473813 CCCCACATTGGGC 473825 >seq10 Length=2191866 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 17102 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 17043 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 17042 CCCCACATTGGGC 17030 >seq1 Length=5981844 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 1818891 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1818950 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 1818951 CCCCACATTGGGC 1818963 >seq618 Length=6227 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||| ||||||| Sbjct 5519 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGAGTTCGAG 5578 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 5579 CCCCACATTGGGC 5591 >seq441 Length=6258 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 1109 TGCCCGGGTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1050 Query 165769 CCCCAC 165774 |||||| Sbjct 1049 CCCCAC 1044 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||| |||||| || || ||||||| ||||||||||||||||| Sbjct 3797 TGCCCGGGTAGCTCAGTCGGTCGAGCGCAAGGCTCTTAATCTTGTGGTCGTGGGTTCGAG 3738 Query 165769 CCCCAC 165774 |||||| Sbjct 3737 CCCCAC 3732 >seq247 Length=19111 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 16215 TGCCCGGGTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 16156 Query 165769 CCCCAC 165774 |||||| Sbjct 16155 CCCCAC 16150 >seq173 Length=46887 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 2257 TGCCCGGGTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2198 Query 165769 CCCCAC 165774 |||||| Sbjct 2197 CCCCAC 2192 >seq43 Length=1130383 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 1109313 TGCCCGGGTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1109372 Query 165769 CCCCAC 165774 |||||| Sbjct 1109373 CCCCAC 1109378 >seq33 Length=1491501 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 1132933 TGCCCGGGTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1132992 Query 165769 CCCCAC 165774 |||||| Sbjct 1132993 CCCCAC 1132998 >seq15 Length=2063187 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 1325715 TGCCCGGGTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1325656 Query 165769 CCCCAC 165774 |||||| Sbjct 1325655 CCCCAC 1325650 >seq11 Length=2108072 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 625 TGCCCGGGTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 566 Query 165769 CCCCAC 165774 |||||| Sbjct 565 CCCCAC 560 >seq68 Length=669586 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 159442 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 159383 Query 165770 CCCAC 165774 ||||| Sbjct 159382 CCCAC 159378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057807044734130