Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq77 95.1 1e-14 seq54 86.0 7e-12 >seq77 Length=584170 Score = 95.1 bits (104), Expect = 1e-14 Identities = 386/595 (65%), Gaps = 39/595 (7%) Strand=Plus/Minus Query 145693 ACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTG--GATGAAGTCCCCGGGCTCGA 145750 ||||||||| ||||| ||||| ||| ||| | || | ||||| ||| ||||| || Sbjct 431750 ACGTGGTTGGCGTAGATGTGCGTGTCGCCC--GTCGAGATGATGAGCTCCTTGGGCTTGA 431693 Query 145751 GGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAG--CTGGCTATGTTGAAGGG 145808 |||||| | |||| ||||| || || | ||||| | || ||||| |||| Sbjct 431692 GGCCCGCCTTGGCCGCGAGGATGTACGTGAGGACCGAGTACGACAGG--ATGTTCCAGGG 431635 Query 145809 CACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCC-CG 145867 | || || || |||| | ||||||||||| |||||| || | ||| | || Sbjct 431634 GAAGCCGAGGAACACGTCCACGCTGCGCTGGTACATGTGGCAGCTCAGGCCGCCGGCGCG 431575 Query 145868 --CCACGTAGAACTGGCACAG-GAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCG 145924 | |||||||||| | | | || ||||||||||||||| ||||| | |||||| Sbjct 431574 GTCGGCGTAGAACTG-CGCGGAGACGTGGCAGGGCGGCAGCGCCATCTTGTCCAGGTCGC 431516 Query 145925 CCGGGTTCCAGGCGG---TGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCC 145981 |||||||||||||| ||| || | | | ||||| |||||| | | | ||| Sbjct 431515 ACGGGTTCCAGGCGGACATGAAGATGCGGCGGCTGCT---GGGGTTGCGCCGCAGCTCGT 431459 Query 145982 CTATCAGGTCCCTGAGCTGGTCCACG--CCCTGCC----------CCCGGTAATCTGTCT 146029 | | || | |||||||| ||| ||||||| |||| |||| Sbjct 431458 CGAGCACAAACTGCAGCTGGTCGACGCCCCCTGCCTCGGCCCCCTGCCGGGGCGGCGTCT 431399 Query 146030 TGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGT 146089 || |||||||||||| | |||||| | | ||||||| |||||| | | || | || Sbjct 431398 TGCAGTCCACGTACGGCGAGCCGAAGCGGCGCCACTGGTGGCCGTAGCCCGCGCCAATGT 431339 Query 146090 CCCCGGGCTC---CCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGG 146146 | || ||| | ||| | ||| ||| | | | | ||| | || || | |||| Sbjct 431338 CGCC---CTCTGGCAGGTGGCGCAGGCCGCGCGCGTCCAAGAACGCGCGCGAGCTGTTGC 431282 Query 146147 CGTCCCAGATCTTGACGCC-CCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATG 146205 ||||||| | ||||| | ||| | | || | | ||||||| || | ||| Sbjct 431281 CGTCCCACACGCGTACGCCGTCGCGCTGCAGGATCGCT-GCGTCCGTGTCGCCGCGCATG 431223 Query 146206 AACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCA 146260 ||||| |||||||| | || |||| ||| ||| | ||||||||||||| Sbjct 431222 AACCACAGCAGCTCCTGGATGACCTTTTGCCACGCAACCTTTTTGGTGGTCAGCA 431168 >seq54 Length=968918 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 145776 GGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCG 145835 ||| ||||| | |||| || |||||||||||||| |||||||||| ||| | ||| Sbjct 433160 GGTGAGCAGAGCGTAGGATGCGATGTTGAAGGGCACTCCCAGCCCCACGTCGCAGCTGCG 433219 Query 145836 CTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTG 145880 ||||||| ||||| |||||| ||| ||||||| |||||||| Sbjct 433220 TTGGTACATGAGGCAGCTGAGCTCTCCGTCCGCCACATAGAACTG 433264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590067572674040