Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq35 141 1e-28
seq8 111 2e-19
seq67 100 3e-16
seq48 98.7 1e-15
>seq35
Length=1396082
Score = 141 bits (156), Expect = 1e-28
Identities = 135/170 (79%), Gaps = 2/170 (1%)
Strand=Plus/Plus
Query 117027 CCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCA-GT 117085
||||| ||||| ||||| ||||||||||| || ||||| |||| || ||| ||
Sbjct 1268824 CCTTCCCGGAGCGGCTGGTAGCCTTCGCGGCTGTGGAGGGTATCTTTTTCAGCGGCTCGT 1268883
Query 117086 TTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAAC 117145
|| || || || || |||||||||||||||||||| ||||||||||| || ||| |||
Sbjct 1268884 TTTGCAGC-ATTTTCTGGCTCAAGAAACGCGGCCTGATGCCCGGCCTAACCTTCTCAAAC 1268942
Query 117146 GAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCT 117195
|| ||||||||| | |||||||| ||||| |||||||| ||||| ||||
Sbjct 1268943 GAACTCATCTCCCGAGACGAGGGGCTGCACTGCGACTTCGCCTGCCTGCT 1268992
>seq8
Length=2307048
Score = 111 bits (122), Expect = 2e-19
Identities = 114/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 116735 GAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAAC 116794
||||| | || ||||| ||||| |||| || ||||| ||||||||||| ||||| |
Sbjct 630928 GAGCGGCGGTTTATCAAATACGTGTTGGCATTCTTCGCTGCCAGCGACGGTATCGTGATG 630987
Query 116795 GAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTAC 116854
||||| ||| | ||| ||| ||||||||||||| | ||||| || ||||||
Sbjct 630988 GAGAACCTGTCGGCGCGGTTCATGTCGGAGGTGCAGGTGCCTGAGGCCCGCGCATTCTAC 631047
Query 116855 GGCTTTCAGATCGCCATGGAGAACGTGCA 116883
||||| ||||| |||||||| ||||||||
Sbjct 631048 GGCTTCCAGATTGCCATGGAAAACGTGCA 631076
>seq67
Length=753185
Score = 100 bits (110), Expect = 3e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851
||||| ||| | |||||||| || || || | ||| ||||| |||||||| || | ||
Sbjct 68403 GGCATTCCCCCTGACCAGCAGCGTCTGATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGT 68344
Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911
||||| ||||||||||||||||||||| |||||| ||||| ||| |||| || |
Sbjct 68343 ACCCTGGCTGACTACAACATCCAGAAGGAGAGCACGCTCCATCTGGTGCTGCGTCTGCGC 68284
Query 40912 GGCGG 40916
|||||
Sbjct 68283 GGCGG 68279
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851
||||| || |||||||||| || || || | ||| ||||| |||||||| || | ||
Sbjct 68776 GGCATTCCTCCGGACCAGCAGCGTCTGATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGT 68717
Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911
||||| |||||||||||||||||||| |||||| ||||| ||| |||| || |
Sbjct 68716 ACCCTGGCTGACTACAACATCCAGAAGGAAAGCACGCTCCATCTGGTGCTGCGTCTGCGC 68657
Query 40912 GGCGG 40916
|||||
Sbjct 68656 GGCGG 68652
>seq48
Length=1037572
Score = 98.7 bits (108), Expect = 1e-15
Identities = 96/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851
||||| ||| |||| ||||| || | |||| || ||||| || || || || | ||||
Sbjct 716483 GGCATTCCCCCGGATCAGCAGCGGTTGATCTTTGCTGGCAAGCAACTAGAGGATGGGCGC 716542
Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911
|| ||| ||| |||||||||||||||||| |||| |||| || ||||||||| | |||
Sbjct 716543 ACGCTCGCCGATTACAACATCCAGAAGGAGAGCACGTTGCACCTGGTGTTGCGCCTTAGG 716602
Query 40912 GGCG 40915
|||
Sbjct 716603 TGCG 716606
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515211143259760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |