Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq35 141 1e-28 seq8 111 2e-19 seq67 100 3e-16 seq48 98.7 1e-15 >seq35 Length=1396082 Score = 141 bits (156), Expect = 1e-28 Identities = 135/170 (79%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 117027 CCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCA-GT 117085 ||||| ||||| ||||| ||||||||||| || ||||| |||| || ||| || Sbjct 1268824 CCTTCCCGGAGCGGCTGGTAGCCTTCGCGGCTGTGGAGGGTATCTTTTTCAGCGGCTCGT 1268883 Query 117086 TTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAAC 117145 || || || || || |||||||||||||||||||| ||||||||||| || ||| ||| Sbjct 1268884 TTTGCAGC-ATTTTCTGGCTCAAGAAACGCGGCCTGATGCCCGGCCTAACCTTCTCAAAC 1268942 Query 117146 GAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCT 117195 || ||||||||| | |||||||| ||||| |||||||| ||||| |||| Sbjct 1268943 GAACTCATCTCCCGAGACGAGGGGCTGCACTGCGACTTCGCCTGCCTGCT 1268992 >seq8 Length=2307048 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 116735 GAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAAC 116794 ||||| | || ||||| ||||| |||| || ||||| ||||||||||| ||||| | Sbjct 630928 GAGCGGCGGTTTATCAAATACGTGTTGGCATTCTTCGCTGCCAGCGACGGTATCGTGATG 630987 Query 116795 GAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTAC 116854 ||||| ||| | ||| ||| ||||||||||||| | ||||| || |||||| Sbjct 630988 GAGAACCTGTCGGCGCGGTTCATGTCGGAGGTGCAGGTGCCTGAGGCCCGCGCATTCTAC 631047 Query 116855 GGCTTTCAGATCGCCATGGAGAACGTGCA 116883 ||||| ||||| |||||||| |||||||| Sbjct 631048 GGCTTCCAGATTGCCATGGAAAACGTGCA 631076 >seq67 Length=753185 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||| ||| | |||||||| || || || | ||| ||||| |||||||| || | || Sbjct 68403 GGCATTCCCCCTGACCAGCAGCGTCTGATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGT 68344 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||||||||||||| |||||| ||||| ||| |||| || | Sbjct 68343 ACCCTGGCTGACTACAACATCCAGAAGGAGAGCACGCTCCATCTGGTGCTGCGTCTGCGC 68284 Query 40912 GGCGG 40916 ||||| Sbjct 68283 GGCGG 68279 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||| || |||||||||| || || || | ||| ||||| |||||||| || | || Sbjct 68776 GGCATTCCTCCGGACCAGCAGCGTCTGATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGT 68717 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| |||||||||||||||||||| |||||| ||||| ||| |||| || | Sbjct 68716 ACCCTGGCTGACTACAACATCCAGAAGGAAAGCACGCTCCATCTGGTGCTGCGTCTGCGC 68657 Query 40912 GGCGG 40916 ||||| Sbjct 68656 GGCGG 68652 >seq48 Length=1037572 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||| ||| |||| ||||| || | |||| || ||||| || || || || | |||| Sbjct 716483 GGCATTCCCCCGGATCAGCAGCGGTTGATCTTTGCTGGCAAGCAACTAGAGGATGGGCGC 716542 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || ||| ||| |||||||||||||||||| |||| |||| || ||||||||| | ||| Sbjct 716543 ACGCTCGCCGATTACAACATCCAGAAGGAGAGCACGTTGCACCTGGTGTTGCGCCTTAGG 716602 Query 40912 GGCG 40915 ||| Sbjct 716603 TGCG 716606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515211143259760