Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq48 98.7 1e-15
seq35 96.9 4e-15
seq67 89.7 6e-13
>seq48
Length=1037572
Score = 98.7 bits (108), Expect = 1e-15
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||| |||| |||| |||||||||||| || |||||||| || ||||| || ||| |
Sbjct 716287 ACGCAGTACCAGGTGCAGTGTGCTCTCCTTCTGGATATTGTAGTCTGCCAGCGTACGCCC 716228
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 43071
|| ||||| ||||| |||||||| || | |||||||||||||
Sbjct 716227 ATCCTCTAGTTGCTTGCCAGCGAAGATCAACCGCTGCTGGTCGG 716184
Score = 87.8 bits (96), Expect = 2e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||||||||| ||||| ||||||||||| || || |||||||| || || || ||| |
Sbjct 716595 CGCAACACCAGGTGCAACGTGCTCTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGCCCA 716536
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069
|| ||||| ||||| ||||| || || | |||||||| ||
Sbjct 716535 TCCTCTAGTTGCTTGCCAGCAAAGATCAACCGCTGCTGATC 716495
>seq35
Length=1396082
Score = 96.9 bits (106), Expect = 4e-15
Identities = 86/108 (80%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||| | ||||| ||||| ||||||||||| ||||| ||||| || |||||||| || |
Sbjct 1305109 ACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGGCC 1305050
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075
|| || |||||||| ||||| || || || ||||||||||| | |||
Sbjct 1305049 ATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGG 1305002
Score = 96.9 bits (106), Expect = 4e-15
Identities = 86/108 (80%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||| | ||||| ||||| ||||||||||| ||||| ||||| || |||||||| || |
Sbjct 1305461 ACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGGCC 1305402
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075
|| || |||||||| ||||| || || || ||||||||||| | |||
Sbjct 1305401 ATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGG 1305354
Score = 96.9 bits (106), Expect = 4e-15
Identities = 86/108 (80%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||| | ||||| ||||| ||||||||||| ||||| ||||| || |||||||| || |
Sbjct 1305832 ACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGGCC 1305773
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075
|| || |||||||| ||||| || || || ||||||||||| | |||
Sbjct 1305772 ATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCGG 1305725
Score = 96.9 bits (106), Expect = 4e-15
Identities = 94/121 (78%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 42955 GTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAG 43014
|||| || | | ||| | ||||| ||||| ||||||||||| ||||| ||||| || |
Sbjct 1306216 GTCCACCGCGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCG 1306157
Query 43015 CCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCG 43074
||||||| || | || || |||||||| ||||| || || || ||||||||||| | ||
Sbjct 1306156 CCAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGCG 1306097
Query 43075 G 43075
|
Sbjct 1306096 G 1306096
>seq67
Length=753185
Score = 89.7 bits (98), Expect = 6e-13
Identities = 81/102 (79%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||| ||||| ||| | ||||||||||| || || ||||| |||||||| || || |
Sbjct 68290 ACGCAGCACCAGATGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCC 68349
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069
|| || |||||||| || ||||| || || |||||||||||
Sbjct 68350 ATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTC 68391
Score = 86.0 bits (94), Expect = 7e-12
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||| ||||| ||| | ||||| ||||| || || ||||| |||||||| || || |
Sbjct 68663 ACGCAGCACCAGATGGAGCGTGCTTTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCC 68722
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069
|| || |||||||| || ||||| || || |||||||||||
Sbjct 68723 ATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTC 68764
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571808658202280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |