Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq67 109 4e-19
seq35 98.7 6e-16
seq48 89.7 3e-13
>seq67
Length=753185
Score = 109 bits (120), Expect = 4e-19
Identities = 92/113 (81%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||||||||| | ||||||||| || | || ||||| ||||| ||||||||||| | |
Sbjct 68652 CCGCCGCGCAGACGCAGCACCAGATGGAGCGTGCTTTCCTTCTGGATGTTGTAGTCAGCC 68711
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275
|| |||| | || |||| ||||||||| |||||||| || |||||||||||
Sbjct 68712 AGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTC 68764
Score = 105 bits (116), Expect = 4e-18
Identities = 91/113 (81%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||||||||| | ||||||||| || | || || || ||||| ||||||||||| | |
Sbjct 68279 CCGCCGCGCAGACGCAGCACCAGATGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCAGCC 68338
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275
|| |||| | || |||| ||||||||| |||||||| || |||||||||||
Sbjct 68339 AGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTC 68391
>seq35
Length=1396082
Score = 98.7 bits (108), Expect = 6e-16
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| |||||||| | ||||||||||| || || || || ||||| ||||||||||| |
Sbjct 1306215 TCCACCGCGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGC 1306156
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275
||| ||| | || |||| ||||||||| || ||||| || |||||||||||
Sbjct 1306155 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTC 1306102
Score = 96.9 bits (106), Expect = 2e-15
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| |||||||| | ||||||||||| || || || || ||||| ||||||||||| | |
Sbjct 1305120 CCACCGCGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCC 1305061
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275
|| ||| | || |||| ||||||||| || ||||| || |||||||||||
Sbjct 1305060 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTC 1305008
Score = 91.5 bits (100), Expect = 1e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||||||||||| || || || || ||||| ||||||||||| | |
Sbjct 1305472 CCACCACGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCC 1305413
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275
|| ||| | || |||| ||||||||| || ||||| || |||||||||||
Sbjct 1305412 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTC 1305360
Score = 91.5 bits (100), Expect = 1e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||||||||||| || || || || ||||| ||||||||||| | |
Sbjct 1305843 CCACCACGCAGACGGAGCACCAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGCC 1305784
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275
|| ||| | || |||| ||||||||| || ||||| || |||||||||||
Sbjct 1305783 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTC 1305731
>seq48
Length=1037572
Score = 89.7 bits (98), Expect = 3e-13
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||||||||| | ||| |||||||| | || || || ||||| || |||||||| | |
Sbjct 716298 CCGCCGCGCAGACGCAGTACCAGGTGCAGTGTGCTCTCCTTCTGGATATTGTAGTCTGCC 716239
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCG 34276
||| ||| | || || | |||||||| ||||| || | |||||||||||||
Sbjct 716238 AGCGTACGCCCATCCTCTAGTTGCTTGCCAGCGAAGATCAACCGCTGCTGGTCG 716185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323067074262560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |