Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq35 98.7 1e-15 >seq35 Length=1396082 Score = 98.7 bits (108), Expect = 1e-15 Identities = 112/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT-CGGGTAGTTTTGCGGCCATCTT 125485 ||||| || ||||| || || ||||| ||||| || ||| | ||||||| || || || Sbjct 1268838 CTGGTAGCCTTCGCGGCTGTGGAGGGTATCTTTTTCAGCGGCTCGTTTTGCAGC-ATTTT 1268896 Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545 ||||||||||| ||||| || |||||||| || || | ||||| | || || || Sbjct 1268897 CTGGCTCAAGAAACGCGGCCTGATGCCCGGCCTAACCTTCTCAAACGAACTCATCTCCCG 1268956 Query 125546 AGACGAGGGCCTACACTGTGACTTTGCC 125573 ||||||||| || ||||| ||||| ||| Sbjct 1268957 AGACGAGGGGCTGCACTGCGACTTCGCC 1268984 Score = 98.7 bits (108), Expect = 1e-15 Identities = 187/272 (69%), Gaps = 10/272 (4%) Strand=Plus/Minus Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||||||| | || ||| || | | | | ||| | || |||||||| | ||| ||| Sbjct 1360430 TGGAGCCTTTTCTGTCCCAACGAGGCGCAAGACCTGGCTGAGTGCTGGGGAGCAGACTTT 1360371 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGA 97175 ||| | ||||||| || || | |||||||| | | | || | ||| || Sbjct 1360370 GAGCGCCTGTACACGCAGTATGAACGCGAGGGCCG----GGCACGCAAGGTGGTGCGCGC 1360315 Query 97176 G----AACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | |||||||| |||||| || ||||||||| ||||| || | ||||||||| | Sbjct 1360314 GCAGCAACTGTGGTTTGCCATCCTGGAGGCTCAGGTGGAGACGGGCAATCCGTACATGTT 1360255 Query 97232 CTACAAGGATACCGTGAATCGCAACAGC-AACCAACGCCACTTGGGCACCATCAAGGGCT 97290 |||||||| | ||| | | | | | ||||| | || ||||||| |||||| | | Sbjct 1360254 GTACAAGGACTC-GTGCAACAAGAAATCCAACCAGCAGAACCTGGGCACTATCAAGTGTT 1360196 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322 ||||||||||||| || ||| | |||||| || Sbjct 1360195 CCAATCTGTGCACCGAGATTATTGAGTACACC 1360164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741047611686760