Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq35 98.7 1e-15
>seq35
Length=1396082
Score = 98.7 bits (108), Expect = 1e-15
Identities = 112/148 (76%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT-CGGGTAGTTTTGCGGCCATCTT 125485
||||| || ||||| || || ||||| ||||| || ||| | ||||||| || || ||
Sbjct 1268838 CTGGTAGCCTTCGCGGCTGTGGAGGGTATCTTTTTCAGCGGCTCGTTTTGCAGC-ATTTT 1268896
Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545
||||||||||| ||||| || |||||||| || || | ||||| | || || ||
Sbjct 1268897 CTGGCTCAAGAAACGCGGCCTGATGCCCGGCCTAACCTTCTCAAACGAACTCATCTCCCG 1268956
Query 125546 AGACGAGGGCCTACACTGTGACTTTGCC 125573
||||||||| || ||||| ||||| |||
Sbjct 1268957 AGACGAGGGGCTGCACTGCGACTTCGCC 1268984
Score = 98.7 bits (108), Expect = 1e-15
Identities = 187/272 (69%), Gaps = 10/272 (4%)
Strand=Plus/Minus
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||||||| | || ||| || | | | | ||| | || |||||||| | ||| |||
Sbjct 1360430 TGGAGCCTTTTCTGTCCCAACGAGGCGCAAGACCTGGCTGAGTGCTGGGGAGCAGACTTT 1360371
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGA 97175
||| | ||||||| || || | |||||||| | | | || | ||| ||
Sbjct 1360370 GAGCGCCTGTACACGCAGTATGAACGCGAGGGCCG----GGCACGCAAGGTGGTGCGCGC 1360315
Query 97176 G----AACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231
| |||||||| |||||| || ||||||||| ||||| || | ||||||||| |
Sbjct 1360314 GCAGCAACTGTGGTTTGCCATCCTGGAGGCTCAGGTGGAGACGGGCAATCCGTACATGTT 1360255
Query 97232 CTACAAGGATACCGTGAATCGCAACAGC-AACCAACGCCACTTGGGCACCATCAAGGGCT 97290
|||||||| | ||| | | | | | ||||| | || ||||||| |||||| | |
Sbjct 1360254 GTACAAGGACTC-GTGCAACAAGAAATCCAACCAGCAGAACCTGGGCACTATCAAGTGTT 1360196
Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322
||||||||||||| || ||| | |||||| ||
Sbjct 1360195 CCAATCTGTGCACCGAGATTATTGAGTACACC 1360164
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741047611686760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |