Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_005946.1 Length=105903 Score E Sequences producing significant alignments: (Bits) Value seq6 91.5 1e-13 >seq6 Length=2401260 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | |||||||| |||||| ||||||| ||||| ||| ||||| | || ||| Sbjct 2072352 GGTCATGCGGGAGGGAATGGCGTGCGGGTTGACGATGATGTCCGGCACAATGCCCTCCGC 2072293 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCGCATGTCCCCTTTTGCGCCGTGA- 71536 | |||||||||||||||| ||| | | ||||| || ||||| || ||||||| Sbjct 2072292 GGAGAAGGGCATGTCCTCCATGGTGTAGGTAATGCCGCAGGTGCCCTTCTG-GCCGTGAC 2072234 Query 71537 ATGACGCAAACTTGTCGCC 71555 || || ||||||||||| Sbjct 2072233 GGGAGGCGAACTTGTCGCC 2072215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338759635001304