Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1 154 2e-33
seq64 143 4e-30
seq32 143 4e-30
seq4 138 2e-28
seq50 136 6e-28
seq7 123 4e-24
seq5 122 1e-23
>seq1
Length=5981844
Score = 154 bits (170), Expect = 2e-33
Identities = 196/270 (73%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||| ||||||| ||||| || ||||| || || ||||| ||||| ||||||
Sbjct 2260241 GCTAAGCGCCATCGCAAGGTGCTTCGCGACAACATTCAGGGTATCACGAAGCCTGCTATC 2260300
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
||||||||||| |||||||| || || |||||| || || | |||| || ||||
Sbjct 2260301 CGTCGTCTGGCACGTCGTGGCGGTGTGAAGCGTATCAGCGGCCTCATCTACGAGGAGACC 2260360
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| ||| |||||| |||||| ||| || |||| ||| | || || ||||||
Sbjct 2260361 CGCACTGTGCTGAAGAACTTCCTTGAGAATGTCATCCGTGACTCGGTCACGTACACCGAG 2260420
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||| || |||||||| ||| ||||||| |||| ||||| |||| || || |||
Sbjct 2260421 CACGCTCGCCGCAAGACTGTGACCGCCATGGACGTCGTGTATGCTCTGAAGCGCCAGGGC 2260480
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702
|| | | || || || || ||||| ||
Sbjct 2260481 CGCACCCTCTACGGCTTCGGTGGTTAAGCT 2260510
Score = 140 bits (154), Expect = 5e-29
Identities = 193/270 (71%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||| ||||||| ||||| || ||||| || || ||||| ||||| ||||||
Sbjct 2273345 GCTAAGCGCCATCGCAAGGTGCTTCGCGACAACATTCAGGGTATCACGAAGCCTGCTATC 2273404
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
||||||||||| |||||||| || || |||||| || || | |||| || ||||
Sbjct 2273405 CGTCGTCTGGCACGTCGTGGCGGTGTGAAGCGTATCAGCGGCCTCATCTACGAGGAGACC 2273464
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| || |||||| |||||| ||| || |||| ||| | || || || |||
Sbjct 2273465 CGCACCGTGCTGAAGAACTTCCTTGAGAATGTCATCCGTGACTCGGTCACGTACACTGAG 2273524
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||| || |||||||| || ||||||| |||| ||||| |||| || || |||
Sbjct 2273525 CACGCTCGCCGCAAGACTGTGACTGCCATGGACGTCGTGTATGCTCTGAAGCGCCAGGGC 2273584
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702
|| | | || || || || ||||| ||
Sbjct 2273585 CGCACCCTCTACGGCTTCGGTGGTTAAGCT 2273614
Score = 118 bits (130), Expect = 2e-22
Identities = 188/270 (70%), Gaps = 0/270 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| ||||| | || || || ||||| || || ||||| ||||| |||||
Sbjct 3902703 GCCAAGCGCCATCGTAAGGTGCTGCGTGACAACATTCAGGGTATCACGAAGCCCGCTATT 3902644
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||| |||| ||||||||||| || ||||| || || | |||| || ||||
Sbjct 3902643 CGTCGTTTGGCACGTCGTGGTGGCGTGAAGCGCATCAGCGGCCTTATCTACGAGGAGACG 3902584
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| || | |||| ||||||| ||| || || | ||| | || ||| || |||
Sbjct 3902583 CGCACGGTGCTCAAGAACTTCCTCGAGAATGTCATTCGTGACTCGGTCACCTACACTGAG 3902524
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| ||| || |||||||| || | ||||| |||| ||||| ||||| || ||||||
Sbjct 3902523 CATGCTCGCCGCAAGACTGTGACAGCTATGGACGTCGTTTATGCCTTGAAGCGCCAAGGC 3902464
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702
|| | | || || || || ||||| ||
Sbjct 3902463 CGCACCCTCTACGGCTTCGGCGGTTAAGCT 3902434
>seq64
Length=802995
Score = 143 bits (158), Expect = 4e-30
Identities = 177/242 (73%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| |||| ||||| ||||||||||| || || |||||||| |||||
Sbjct 481113 GCCAAGCGTCACCGCAAGGTACTTCGTGATAACATCCAGGGCATTACCAAGCCCGCTATT 481172
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||| ||||||| |||||||| |||||||| || || | |||| || ||||
Sbjct 481173 CGCCGTTTGGCTCGCCGTGGTGGTGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGACC 481232
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| ||| |||||| |||||| ||| ||| |||| ||| | | ||| ||||||
Sbjct 481233 CGCACTGTGCTGAAGAACTTCCTTGAGAACGTCATCCGTGACTCGGTGACCTACACCGAG 481292
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||| || ||||| ||||| ||||||| ||||||| || | || || || |||
Sbjct 481293 CACGCTCGTCGCAAGACCGTCACGGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGC 481352
Query 16673 CG 16674
||
Sbjct 481353 CG 481354
Score = 140 bits (154), Expect = 5e-29
Identities = 176/242 (73%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| |||| ||||| ||||||||||| || || |||||||| |||||
Sbjct 443894 GCCAAGCGTCACCGCAAGGTACTTCGTGATAACATCCAGGGCATTACCAAGCCCGCTATT 443835
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||| ||||||| |||||||| |||||||| || || | |||| || ||||
Sbjct 443834 CGCCGTTTGGCTCGCCGTGGTGGTGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGACC 443775
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| ||| |||||| |||||| ||| ||| |||| || | | ||| ||||||
Sbjct 443774 CGCACTGTGCTGAAGAACTTCCTTGAGAACGTCATCCGGGACTCGGTGACCTACACCGAG 443715
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||| || ||||| ||||| ||||||| ||||||| || | || || || |||
Sbjct 443714 CACGCTCGTCGCAAGACCGTCACGGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGC 443655
Query 16673 CG 16674
||
Sbjct 443654 CG 443653
>seq32
Length=1503621
Score = 143 bits (158), Expect = 4e-30
Identities = 177/242 (73%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||| || |||| ||| || || |||||||| || ||||| ||||| |||||
Sbjct 1278146 GCTAAGCGCCACCGCAAGGTTCTCCGCGACAACATCCAGGGCATCACGAAGCCTGCTATA 1278205
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||| |||||||||||||||| |||||||| || ||| | |||| || ||||
Sbjct 1278206 CGTCGTTTGGCTCGTCGTGGTGGCGTCAAGCGCATCAGCGGACTCATCTACGAGGAGACC 1278265
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| || |||||| ||| || ||| ||| || | ||| || || || || |||
Sbjct 1278266 CGCACGGTGCTGAAGAACTTTCTGGAGAACGTGATTCGTGACTCTGTCACGTACACGGAG 1278325
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||| || ||||||||||| | ||||| |||||||||| | || || || |||
Sbjct 1278326 CACGCTCGCCGCAAGACTGTCACGGCTATGGACGTCGTCTATGCGCTCAAGCGCCAGGGC 1278385
Query 16673 CG 16674
||
Sbjct 1278386 CG 1278387
Score = 143 bits (158), Expect = 4e-30
Identities = 177/242 (73%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||| || |||| ||| || || |||||||| || ||||| ||||| |||||
Sbjct 1284625 GCTAAGCGCCACCGCAAGGTTCTCCGTGACAACATCCAGGGCATCACGAAGCCTGCTATT 1284684
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||| |||||||||||||||| |||||||| || ||| | |||| || ||||
Sbjct 1284685 CGTCGTTTGGCTCGTCGTGGTGGCGTCAAGCGCATCAGCGGACTCATCTACGAGGAGACC 1284744
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| || |||||| ||| || ||| ||| || | ||| || || || || |||
Sbjct 1284745 CGCACGGTGCTGAAGAACTTTCTGGAGAACGTGATTCGTGACTCTGTCACGTACACGGAG 1284804
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||| || ||||||||||| | ||||| |||||||||| | || || || |||
Sbjct 1284805 CACGCTCGCCGCAAGACTGTCACGGCTATGGACGTCGTCTATGCGCTCAAGCGCCAGGGC 1284864
Query 16673 CG 16674
||
Sbjct 1284865 CG 1284866
>seq4
Length=2765396
Score = 138 bits (152), Expect = 2e-28
Identities = 178/246 (72%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
||||| || |||||||| || ||||||||||| ||||| || |||||||| || ||||||
Sbjct 1872464 CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTATTCGCCGTCTGGCACGCCGTGGT 1872523
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| ||||||||| | || | ||||||| |||| || || |||||| |||
Sbjct 1872524 GGTGTCAAGCGTATTAGCGGCCTCATCTATGAGGAGACCCGCACAGTACTGAAGAATTTC 1872583
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
|| ||| ||| || | ||| | || ||| |||||||||||| || ||||||||
Sbjct 1872584 CTGGAGAACGTCATTCGTGACTCGGTCACCTACACCGAGCACGCTCGCCGCAAGACTGTG 1872643
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693
||| | ||||| | ||||| || |||| || || || |||| | ||||| || ||
Sbjct 1872644 ACCGCTATGGACGTGGTCTACGCGCTGAAGCGACAGGGTCGTACTCTGTATGGCTTCGGT 1872703
Query 16694 AGTTAA 16699
|||||
Sbjct 1872704 GGTTAA 1872709
>seq50
Length=1026462
Score = 136 bits (150), Expect = 6e-28
Identities = 176/243 (72%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||||||||||| || || ||||||||||| || || |||||||| || ||
Sbjct 791545 CGCCAAGCGTCATCGCAAGGTGCTCCGCGATAACATCCAGGGCATTACCAAGCCCGCCAT 791604
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||||| ||||||| || ||||| || |||||| || ||| | |||| || ||||
Sbjct 791605 CCGTCGTTTGGCTCGCCGCGGTGGCGTGAAGCGTATCAGTGGTCTCATCTACGAGGAGAC 791664
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| || | |||| ||| | ||| ||| || | ||| | || |||||| ||
Sbjct 791665 GCGAACCGTGCTCAAGAACTTTTTGGAGAACGTCATACGCGATTCCGTCACCTATACTGA 791724
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||||| || |||||||| || | |||||| |||||||||| | || || || ||
Sbjct 791725 GCACGCTCGCCGCAAGACTGTGACAGCTATGGATGTCGTCTATGCCCTCAAGCGCCAGGG 791784
Query 16672 CCG 16674
|||
Sbjct 791785 CCG 791787
>seq7
Length=2412439
Score = 123 bits (136), Expect = 4e-24
Identities = 173/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||| ||||| |||| ||| || ||||||||||| || ||||| ||||| || ||
Sbjct 266746 CGCTAAACGTCACCGCAAGGTTCTACGTGATAACATCCAGGGCATCACGAAGCCTGCCAT 266687
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| |||||||| || ||||| || || | | || || ||||
Sbjct 266686 CCGCCGCCTGGCTCGGCGTGGTGGCGTTAAGCGCATCAGCGGCCTCATTTACGAGGAGAC 266627
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| || | |||| |||||| ||| ||| || | |||| | || ||| |||||
Sbjct 266626 CCGCACGGTCCTCAAGAACTTCCTGGAGAACGTCATTCGTGATTCGGTCACCTACACCGA 266567
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||||| || ||||| ||||| ||||||| | || || || | || || || ||
Sbjct 266566 GCACGCTCGTCGCAAGACCGTCACGGCCATGGACGTGGTTTACGCGCTCAAGCGCCAGGG 266507
Query 16672 CCG 16674
|||
Sbjct 266506 CCG 266504
>seq5
Length=2431615
Score = 122 bits (134), Expect = 1e-23
Identities = 183/260 (70%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| || |||| | ||| || || ||||||||||| ||||||||||| || ||
Sbjct 1486890 GCAAAGCGCCACCGCAAAGTTCTCCGTGACAACATCCAAGGCATCACCAAGCCTGCCATT 1486949
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || ||||||| ||||| || || |||||| | || | | || || || |
Sbjct 1486950 CGGCGATTGGCTCGCCGTGGCGGTGTAAAGCGTATTAGCGGGCTCATTTACGAGGAAACC 1487009
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| || | |||| |||||| ||| ||| |||| |||| | | ||||| |||
Sbjct 1487010 CGCACGGTCCTCAAGAACTTCCTGGAGAACGTCATCCGTGATTCAGTTACTTATACTGAG 1487069
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||| || ||||||||||| ||||||| |||| || ||| | || || || |||
Sbjct 1487070 CACGCTCGCCGCAAGACTGTCACAGCCATGGACGTCGTATACGCACTTAAGCGCCAGGGC 1487129
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|| | | ||||| |||||
Sbjct 1487130 CGCACCCTGTATGGCTTTGG 1487149
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074056201943
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