Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 154 2e-33 seq64 143 4e-30 seq32 143 4e-30 seq4 138 2e-28 seq50 136 6e-28 seq7 123 4e-24 seq5 122 1e-23 >seq1 Length=5981844 Score = 154 bits (170), Expect = 2e-33 Identities = 196/270 (73%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||||| ||||| || ||||| || || ||||| ||||| |||||| Sbjct 2260241 GCTAAGCGCCATCGCAAGGTGCTTCGCGACAACATTCAGGGTATCACGAAGCCTGCTATC 2260300 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| |||||||| || || |||||| || || | |||| || |||| Sbjct 2260301 CGTCGTCTGGCACGTCGTGGCGGTGTGAAGCGTATCAGCGGCCTCATCTACGAGGAGACC 2260360 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || ||| |||||| |||||| ||| || |||| ||| | || || |||||| Sbjct 2260361 CGCACTGTGCTGAAGAACTTCCTTGAGAATGTCATCCGTGACTCGGTCACGTACACCGAG 2260420 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || |||||||| ||| ||||||| |||| ||||| |||| || || ||| Sbjct 2260421 CACGCTCGCCGCAAGACTGTGACCGCCATGGACGTCGTGTATGCTCTGAAGCGCCAGGGC 2260480 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | || || || || ||||| || Sbjct 2260481 CGCACCCTCTACGGCTTCGGTGGTTAAGCT 2260510 Score = 140 bits (154), Expect = 5e-29 Identities = 193/270 (71%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||||| ||||| || ||||| || || ||||| ||||| |||||| Sbjct 2273345 GCTAAGCGCCATCGCAAGGTGCTTCGCGACAACATTCAGGGTATCACGAAGCCTGCTATC 2273404 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| |||||||| || || |||||| || || | |||| || |||| Sbjct 2273405 CGTCGTCTGGCACGTCGTGGCGGTGTGAAGCGTATCAGCGGCCTCATCTACGAGGAGACC 2273464 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || || |||||| |||||| ||| || |||| ||| | || || || ||| Sbjct 2273465 CGCACCGTGCTGAAGAACTTCCTTGAGAATGTCATCCGTGACTCGGTCACGTACACTGAG 2273524 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || |||||||| || ||||||| |||| ||||| |||| || || ||| Sbjct 2273525 CACGCTCGCCGCAAGACTGTGACTGCCATGGACGTCGTGTATGCTCTGAAGCGCCAGGGC 2273584 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | || || || || ||||| || Sbjct 2273585 CGCACCCTCTACGGCTTCGGTGGTTAAGCT 2273614 Score = 118 bits (130), Expect = 2e-22 Identities = 188/270 (70%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | || || || ||||| || || ||||| ||||| ||||| Sbjct 3902703 GCCAAGCGCCATCGTAAGGTGCTGCGTGACAACATTCAGGGTATCACGAAGCCCGCTATT 3902644 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||| ||||||||||| || ||||| || || | |||| || |||| Sbjct 3902643 CGTCGTTTGGCACGTCGTGGTGGCGTGAAGCGCATCAGCGGCCTTATCTACGAGGAGACG 3902584 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || || | |||| ||||||| ||| || || | ||| | || ||| || ||| Sbjct 3902583 CGCACGGTGCTCAAGAACTTCCTCGAGAATGTCATTCGTGACTCGGTCACCTACACTGAG 3902524 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||| || |||||||| || | ||||| |||| ||||| ||||| || |||||| Sbjct 3902523 CATGCTCGCCGCAAGACTGTGACAGCTATGGACGTCGTTTATGCCTTGAAGCGCCAAGGC 3902464 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | || || || || ||||| || Sbjct 3902463 CGCACCCTCTACGGCTTCGGCGGTTAAGCT 3902434 >seq64 Length=802995 Score = 143 bits (158), Expect = 4e-30 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| ||||| ||||||||||| || || |||||||| ||||| Sbjct 481113 GCCAAGCGTCACCGCAAGGTACTTCGTGATAACATCCAGGGCATTACCAAGCCCGCTATT 481172 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||| |||||||| |||||||| || || | |||| || |||| Sbjct 481173 CGCCGTTTGGCTCGCCGTGGTGGTGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGACC 481232 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || ||| |||||| |||||| ||| ||| |||| ||| | | ||| |||||| Sbjct 481233 CGCACTGTGCTGAAGAACTTCCTTGAGAACGTCATCCGTGACTCGGTGACCTACACCGAG 481292 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| ||||| ||||||| ||||||| || | || || || ||| Sbjct 481293 CACGCTCGTCGCAAGACCGTCACGGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGC 481352 Query 16673 CG 16674 || Sbjct 481353 CG 481354 Score = 140 bits (154), Expect = 5e-29 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| ||||| ||||||||||| || || |||||||| ||||| Sbjct 443894 GCCAAGCGTCACCGCAAGGTACTTCGTGATAACATCCAGGGCATTACCAAGCCCGCTATT 443835 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||| |||||||| |||||||| || || | |||| || |||| Sbjct 443834 CGCCGTTTGGCTCGCCGTGGTGGTGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGACC 443775 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || ||| |||||| |||||| ||| ||| |||| || | | ||| |||||| Sbjct 443774 CGCACTGTGCTGAAGAACTTCCTTGAGAACGTCATCCGGGACTCGGTGACCTACACCGAG 443715 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| ||||| ||||||| ||||||| || | || || || ||| Sbjct 443714 CACGCTCGTCGCAAGACCGTCACGGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGC 443655 Query 16673 CG 16674 || Sbjct 443654 CG 443653 >seq32 Length=1503621 Score = 143 bits (158), Expect = 4e-30 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || |||| ||| || || |||||||| || ||||| ||||| ||||| Sbjct 1278146 GCTAAGCGCCACCGCAAGGTTCTCCGCGACAACATCCAGGGCATCACGAAGCCTGCTATA 1278205 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||||||||||||||| |||||||| || ||| | |||| || |||| Sbjct 1278206 CGTCGTTTGGCTCGTCGTGGTGGCGTCAAGCGCATCAGCGGACTCATCTACGAGGAGACC 1278265 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || || |||||| ||| || ||| ||| || | ||| || || || || ||| Sbjct 1278266 CGCACGGTGCTGAAGAACTTTCTGGAGAACGTGATTCGTGACTCTGTCACGTACACGGAG 1278325 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||||||||| | ||||| |||||||||| | || || || ||| Sbjct 1278326 CACGCTCGCCGCAAGACTGTCACGGCTATGGACGTCGTCTATGCGCTCAAGCGCCAGGGC 1278385 Query 16673 CG 16674 || Sbjct 1278386 CG 1278387 Score = 143 bits (158), Expect = 4e-30 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || |||| ||| || || |||||||| || ||||| ||||| ||||| Sbjct 1284625 GCTAAGCGCCACCGCAAGGTTCTCCGTGACAACATCCAGGGCATCACGAAGCCTGCTATT 1284684 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||||||||||||||| |||||||| || ||| | |||| || |||| Sbjct 1284685 CGTCGTTTGGCTCGTCGTGGTGGCGTCAAGCGCATCAGCGGACTCATCTACGAGGAGACC 1284744 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || || |||||| ||| || ||| ||| || | ||| || || || || ||| Sbjct 1284745 CGCACGGTGCTGAAGAACTTTCTGGAGAACGTGATTCGTGACTCTGTCACGTACACGGAG 1284804 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||||||||| | ||||| |||||||||| | || || || ||| Sbjct 1284805 CACGCTCGCCGCAAGACTGTCACGGCTATGGACGTCGTCTATGCGCTCAAGCGCCAGGGC 1284864 Query 16673 CG 16674 || Sbjct 1284865 CG 1284866 >seq4 Length=2765396 Score = 138 bits (152), Expect = 2e-28 Identities = 178/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || |||||||| || ||||||||||| ||||| || |||||||| || |||||| Sbjct 1872464 CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTATTCGCCGTCTGGCACGCCGTGGT 1872523 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| | || | ||||||| |||| || || |||||| ||| Sbjct 1872524 GGTGTCAAGCGTATTAGCGGCCTCATCTATGAGGAGACCCGCACAGTACTGAAGAATTTC 1872583 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | ||| | || ||| |||||||||||| || |||||||| Sbjct 1872584 CTGGAGAACGTCATTCGTGACTCGGTCACCTACACCGAGCACGCTCGCCGCAAGACTGTG 1872643 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| | ||||| | ||||| || |||| || || || |||| | ||||| || || Sbjct 1872644 ACCGCTATGGACGTGGTCTACGCGCTGAAGCGACAGGGTCGTACTCTGTATGGCTTCGGT 1872703 Query 16694 AGTTAA 16699 ||||| Sbjct 1872704 GGTTAA 1872709 >seq50 Length=1026462 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| || || ||||||||||| || || |||||||| || || Sbjct 791545 CGCCAAGCGTCATCGCAAGGTGCTCCGCGATAACATCCAGGGCATTACCAAGCCCGCCAT 791604 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| ||||||| || ||||| || |||||| || ||| | |||| || |||| Sbjct 791605 CCGTCGTTTGGCTCGCCGCGGTGGCGTGAAGCGTATCAGTGGTCTCATCTACGAGGAGAC 791664 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || || | |||| ||| | ||| ||| || | ||| | || |||||| || Sbjct 791665 GCGAACCGTGCTCAAGAACTTTTTGGAGAACGTCATACGCGATTCCGTCACCTATACTGA 791724 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || |||||||| || | |||||| |||||||||| | || || || || Sbjct 791725 GCACGCTCGCCGCAAGACTGTGACAGCTATGGATGTCGTCTATGCCCTCAAGCGCCAGGG 791784 Query 16672 CCG 16674 ||| Sbjct 791785 CCG 791787 >seq7 Length=2412439 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| ||||| |||| ||| || ||||||||||| || ||||| ||||| || || Sbjct 266746 CGCTAAACGTCACCGCAAGGTTCTACGTGATAACATCCAGGGCATCACGAAGCCTGCCAT 266687 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| |||||||| || ||||| || || | | || || |||| Sbjct 266686 CCGCCGCCTGGCTCGGCGTGGTGGCGTTAAGCGCATCAGCGGCCTCATTTACGAGGAGAC 266627 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || || | |||| |||||| ||| ||| || | |||| | || ||| ||||| Sbjct 266626 CCGCACGGTCCTCAAGAACTTCCTGGAGAACGTCATTCGTGATTCGGTCACCTACACCGA 266567 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| ||||| ||||||| | || || || | || || || || Sbjct 266566 GCACGCTCGTCGCAAGACCGTCACGGCCATGGACGTGGTTTACGCGCTCAAGCGCCAGGG 266507 Query 16672 CCG 16674 ||| Sbjct 266506 CCG 266504 >seq5 Length=2431615 Score = 122 bits (134), Expect = 1e-23 Identities = 183/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| | ||| || || ||||||||||| ||||||||||| || || Sbjct 1486890 GCAAAGCGCCACCGCAAAGTTCTCCGTGACAACATCCAAGGCATCACCAAGCCTGCCATT 1486949 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||||| ||||| || || |||||| | || | | || || || | Sbjct 1486950 CGGCGATTGGCTCGCCGTGGCGGTGTAAAGCGTATTAGCGGGCTCATTTACGAGGAAACC 1487009 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || || | |||| |||||| ||| ||| |||| |||| | | ||||| ||| Sbjct 1487010 CGCACGGTCCTCAAGAACTTCCTGGAGAACGTCATCCGTGATTCAGTTACTTATACTGAG 1487069 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||||||||| ||||||| |||| || ||| | || || || ||| Sbjct 1487070 CACGCTCGCCGCAAGACTGTCACAGCCATGGACGTCGTATACGCACTTAAGCGCCAGGGC 1487129 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | ||||| ||||| Sbjct 1487130 CGCACCCTGTATGGCTTTGG 1487149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074056201943